RNA id: XM_043249600.1


Basic Information

Item Value
RNA id XM_043249600.1
length 1535
RNA type mRNA
GC content 0.39
exon number 6
gene id si:ch211-67e16.3
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7948380 ~ 7952282 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agaaaatgaaacatgtaAATGACGTGCCTATATGTTAgccaatttaaaattttacctAGCTGAACTTTTGATCATAACTATtaggaaacaaacaaactattGATAACAAAATGAGAATAGCGCATATGACTTTTTCGTTCTTATGAAACTAAACTGCACAGGCATAAATGGATCAGAATTGCTTTATTGCTCATATAGTAGGATACGGGTTTTTCCTAACATGGCTGCGCATCAAACATTTTCCTTTCAACAACTTCATATTACAGGAAAGCTGCCCACTCACTTCCTCAGCATCAGACGCATGTCTCAGCTGGGACACCTTAAGAAAAGAGCAAAAACAAACCGAAGAGCTTCGGCCAGCATCACATTGTCAAACCGACGCGGATACGTTAACATGCCTGACAAGTTCACTCTGCTCACTTTCGGCTTTTGTTTCATACTTCACAATGTTTGCAGTTGGACTGTGAGCGAACCTCTCGACCACACATTCAATGAAGACGACTCTGTCAGCGTCACGTGCACGATTTATGCAAATGAAACGTTTCAGGTGGAAGCTAAATTGAAAATGAACGGTAAATATGTTTGTGAGGTTTATAACAAAAGCCAAGTGCAGGACACAAGTAAAATTAACTGCAAATGGCATCGCGAGGGCAACAAATTCACGTTTACCTTAATGAAACCCGAGGGcttacacaaaaatgaattttcctGTGAGATTTCCAAAGTTAAACCATTTCCAATTGAACGCGAAGAAGGACCGAAAACTAAGCTTTTCCGAGgttgcaATAAGTCTTTGGCTTCACTGAAGAGCAGTTGTCCGTTCACTAACCAAACCGATAACCAGAATCATACACCTGTAAAAAGGGACACACCTGAAGAAATATACACCCTATTAATCTGCAGTCTGATAATAGTGGTGGTACTGCTGTGTGTTTACAGCATGATTATTACTGCATTCTACATCAGACTGAGGGAGAAAAAGCCCGAGTCTTTAGATACATTGACCTATGTCCCGATGCAGAGGAACGTAAAGCGGCATGATCTAGAGAACACAGAATATGTGGACATGCGTGAAGTGCAGAAACAGGGAGGATCCCACAGAGATATGAACCACAACTCTCATCTTGCCTGAACCCATTTCTAGTGGCCCGTGATTTGACGGCTCTAGGATTGCTGGGTGAATTTTAGTCTACACTATATTTCATGACAAAACGATTGCCTTTCTACCAAACAAAGCAGACCTTCTTCTTTCATTTCCGGTCTTGATGTTCTCTGCATCAGATGGTTTCATCTGGTGACTTGTACAACTTAAGTTGAATTGTAGCTATGCCAAGttaaatgtatgtacagtatcAGCTTGGGCATTTTTCTCATTATCATTTTGATCCCATGGACCAGTAATCAATGATAAGATTTGTTTGGTTCAGtgctttttctacatttctttatgacaataaatatataaaacagagaGTATGTGGAACGCTGAATTACATTTGCTGACTATAaggtgaaataaataaagataagaAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101355 lncRNA downstream 126491 7820008 ~ 7821889 (-) True G68554
TU101356 lncRNA downstream 129548 7815249 ~ 7818832 (-) True G68555
TU101275 lncRNA downstream 566872 7381290 ~ 7381508 (-) True G68489
TU101258 lncRNA downstream 606886 7327829 ~ 7341494 (-) True G68473
TU101111 lncRNA downstream 794426 7146440 ~ 7153954 (-) False LOC122351350
XR_006251831.1 lncRNA upstream 518862 8470863 ~ 8474578 (-) True LOC122352023
TU101773 lncRNA upstream 809770 8761771 ~ 8835225 (-) True G68822
TU101778 lncRNA upstream 841860 8793861 ~ 8801749 (-) True G68826
TU101782 lncRNA upstream 850384 8802385 ~ 8805405 (-) True G68830
TU101792 lncRNA upstream 864519 8816520 ~ 8817618 (-) True G68839
XM_043248746.1 mRNA downstream 575 7939798 ~ 7947805 (-) False si:ch211-67e16.4
XM_043248745.1 mRNA downstream 575 7941133 ~ 7947805 (-) False si:ch211-67e16.4
XM_043248744.1 mRNA downstream 577 7938052 ~ 7947803 (-) True si:ch211-67e16.4
XM_043248747.1 mRNA downstream 578 7943581 ~ 7947802 (-) False si:ch211-67e16.4
XM_043249596.1 mRNA downstream 55972 7881178 ~ 7892408 (-) False si:ch211-67e16.11
XM_043249603.1 mRNA upstream 3088 7955089 ~ 7957338 (-) True LOC122352095
XM_043248835.1 mRNA upstream 64760 8016761 ~ 8024672 (-) True LOC122351623
XM_043249157.1 mRNA upstream 74228 8026229 ~ 8055168 (-) False abi2a
XM_043249159.1 mRNA upstream 74228 8026229 ~ 8055167 (-) False abi2a
XM_043249158.1 mRNA upstream 74228 8026229 ~ 8055167 (-) False abi2a
TU101110 other downstream 799760 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 1687311 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1848497 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 1904455 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 2025560 5919757 ~ 5922820 (-) False LOC122351463
TU101496 other upstream 62448 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 127135 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 388942 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 1956187 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 2481506 10433507 ~ 10441872 (-) False trim13

Expression Profile