RNA id: XM_043249603.1


Basic Information

Item Value
RNA id XM_043249603.1
length 915
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC122352095
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7955089 ~ 7957338 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATGTTTccagagctcactcaagtataaAGAGACAGGGGGGATACCTCCACAGTTATTACATGACACAATGATTATCACACTTATTAGAATCTTTATATATGTCCCGCTTGGATTGGCTCTGCGCGTGTCTCAGCCTTACCGAGCGGTCGGGAAAGAGGGAGAAGTCCCTCTCCGCTGCTCCTTCACCTCAAATGTACAGCCTCAGGAAATGCAGGTGTCTCTGTACAGAGGTTTGCACGGCCGCGAGAGGATCTGCAGAGCTTACGTGAACGTCTCCGAGCCGCGCTTCACGACAGACGGCTCGGTCAACTGCAGAGGGAATATCAGCCCTGGAAGAGTAGACATGATCGTGTCTGGCCTGCGAGGGAACGACACGGACTTCTATCGCTGCGCGATCGAGATTTTCTTCCCGCCTCCCTATCTCAGGACCATCGGGAACGGCACTGTTGTTGACATGCAAGAAACTCCAAACTGTCCCACTGCATCCACCCAGAGCCAGATTCAGAGCCAGACTTCAGAACAGGAATCTGTCGAATATGATGTGGGCCCACTTCCTCTGCTGTATGCCATCCTGATCATCACCTCCTGCAGTTTAATTCTACAGATGTTTGCCTGCAAATGGAGGACCTCTGCATCCACGGCACCTATGCTTTCACAAAAAGAGCGCTATATGAAATTCTAAGGGGGGTAACATCTCCGTCTGCATGTACTCGCATGCATTTTAACCTGCATGTACTCACATGTCATTTTCTCCTGCatgtattttcatgtaattttaacCTGCATGTATTGACATGTACTAACATGAATTCTCACTTGCATGTATTCACATGTATTTACACAACACCactgtctttattttgttttattcatttttttttttacaaagaattaaacattatttacattttaa

Function

GO: NA

KEGG:

id description
K06470 CD28; CD28 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101355 lncRNA downstream 133200 7820008 ~ 7821889 (-) True G68554
TU101356 lncRNA downstream 136257 7815249 ~ 7818832 (-) True G68555
TU101275 lncRNA downstream 573581 7381290 ~ 7381508 (-) True G68489
TU101258 lncRNA downstream 613595 7327829 ~ 7341494 (-) True G68473
TU101111 lncRNA downstream 801135 7146440 ~ 7153954 (-) False LOC122351350
XR_006251831.1 lncRNA upstream 513525 8470863 ~ 8474578 (-) True LOC122352023
TU101773 lncRNA upstream 804433 8761771 ~ 8835225 (-) True G68822
TU101778 lncRNA upstream 836523 8793861 ~ 8801749 (-) True G68826
TU101782 lncRNA upstream 845047 8802385 ~ 8805405 (-) True G68830
TU101792 lncRNA upstream 859182 8816520 ~ 8817618 (-) True G68839
XM_043249602.1 mRNA downstream 2807 7948380 ~ 7952282 (-) False si:ch211-67e16.3
XM_043249600.1 mRNA downstream 3088 7948380 ~ 7952001 (-) True si:ch211-67e16.3
XM_043248746.1 mRNA downstream 7284 7939798 ~ 7947805 (-) False si:ch211-67e16.4
XM_043248745.1 mRNA downstream 7284 7941133 ~ 7947805 (-) False si:ch211-67e16.4
XM_043248744.1 mRNA downstream 7286 7938052 ~ 7947803 (-) True si:ch211-67e16.4
XM_043248835.1 mRNA upstream 59423 8016761 ~ 8024672 (-) True LOC122351623
XM_043249157.1 mRNA upstream 68891 8026229 ~ 8055168 (-) False abi2a
XM_043249159.1 mRNA upstream 68891 8026229 ~ 8055167 (-) False abi2a
XM_043249158.1 mRNA upstream 68891 8026229 ~ 8055167 (-) False abi2a
XM_043249154.1 mRNA upstream 68891 8026229 ~ 8055167 (-) False abi2a
TU101110 other downstream 806469 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 1694020 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1855206 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 1911164 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 2032269 5919757 ~ 5922820 (-) False LOC122351463
TU101496 other upstream 57111 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 121798 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 383605 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 1950850 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 2476169 10433507 ~ 10441872 (-) False trim13

Expression Profile