RNA id: XM_043249604.1


Basic Information

Item Value
RNA id XM_043249604.1
length 2238
RNA type mRNA
GC content 0.53
exon number 20
gene id agps
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4576182 ~ 4610978 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttattattacaacgTTAGATAAGATAGCGATAAATACTTGAAAAGTGGTGTCTActaaccaaaaataaacagccTAATCTAGGGTTTATGGGAAATCCTCTGTATTTCAGTCAGTAACAGCGCGCCGGAGCGCGCGGGGAGGGAGGCGGAGCGCGGTGCATGACGGGACGCGGGTGTAATCTCCATCAGCCGCCCGCTGACCTCTGACAGCAAACACGGAAGCAGCATGGCGTCAAACGGCAGCAGCGCGCAGCAGAGGCTCCGGATCATAGCCGGACATTTGCAGAAACGGCCAGAAGACGAAAACGCGAGCGTCGCCGCGCAGGAGTGCAAAGCCGAGGCGCCCCGATCCGAGCCGAGCGGCGCGACGCCGGTACCGAGGAGGAGacaGGAGATCATGAAGTGGAATGGCTGGGGTTACAGTGACTCCAGGTTCCTCTTCAATAAAAAAGGTCAAGCAGAGTTCACAGGGAAACGGTATCGGTTGAGTGGGCTGATTTTACCAAGTCTGAAGGACTGGTTCGAGGGCACGTTTGGCGCCAATTTACAGCACAAGTCTCCTGCCACGCCCAGTCTGAATTTAAGTGCAGTCGCTCCTCCTAACCTGAACGAGCCCTTCATCGAGGATCTGAAAGCAGCGGGTCTGGCCGTGTCACATGACCCAGAGGACCGGGTTTTCCGAGCTCATGGTCACTGCCTGCATGAGATCTTTGCCCTGCGCGAGGGGAGGATAGGACGGGTGCCCGACATGGTGCTCTGGCCGAgctgtCACAATGATGTGGAGAAGATCGTGGATCTGGCCTGCAAACACAATGTCTGCTTGATACCGTACGGAGGTGGGACGAGTGTTTCCAGTGCTCTGGAGTGCCCTCGAGAGGAGACTCGCTCCATTGTCTCTTTGGACACGTCTCAgatgAACCGGATATTGTGGATCGATGAGAAGAATCTAACGGCTCACGTGGAGGCTGGAATGATCGGACAGGATCTGGAGAGACAGTTGAATGAGCGTGGTTACTGTACGGGCCACGAGCCGGACTCCATGGAGTTCAGTTCTCTGGGCGGCTGGGTGGCCACGCGGGCGTCCGGCATGAAGAAAAACATCTACGGCAACATCGAGGACCTGGTGGTGCATATAAAGATGGTGACCCCTAGAGGAGTGATTGAGAAGAGCTGTCTGGGGCCCCGCATGTCCACCGGCCCCGACATACATCACTTCATACTGGGCTCAGAGGGGACTCTGGGAGTGGTGACTGAAGTGACGCTGAAGATCCGACCCGTTCCCGAGTATCAGAAGTACGGCTCCGTCGTCTTCCCAAACTTCCAGCAGGGTGTGGCGTGCCTGAGAGAGGTGGCCAGACAGAGATGCGCTCCAGCGTCCATTCGGCTAATGGACAACGAGCAGTTTCAGTTCGGTCATGCGCTCAAGCCACAAGTGTCCTCCATATTCACGTCATTCCTGGACGGGTTGAAAAAATTCTACATCACAAAGTTCAAAGGGTTCGACCCGCACCACCTGTGTGTCGCCACGCTGTTATTCGAAGGGGATCGTGGGAAGGTTTTGCAGCACGAGAAACAGGTTTACGACATCGCAGCCAAATTCGGGGGTCTGGCAGCAGGAGAGGATAACGGTCAGAGGGGTTACATGCTGACGTTCGTCATCGCTTATCTTCGGGATTTGGGAATGGACTACTATGTGATCGGAGAGTCGTTTGAGACGTCTGTGCCTTGGGACAGGGTTTTGGACTTGTGCAGGAATGTGAAGGAGAGGATTGTGAGAGAGTGTAAGGAGAGAGGAGTACAGTTCCCTCCGCTCTCCACatgcagAGTAACACAGACGTATGATGCAGGTGcttgtgtgtatttctattttGCCTTTAATTACCGGGGTCTGAGCGATCCAGTTCACGTCTATGAACAAGTGGAGCATGCAGCCCGGGAGGAGATTCTAGCCAACGGAGGAAGTCTGTCTCACCACCATGGAGtgGGAAAACTGCGGAAGGAATGGATGAAAGAGAGCGTGTCCGGCGTAAATATATTGGGCCTCGGcatgctccagtcggtgaaggaGTACGTGGACCCTCAGAACGTTTTTGGCAGCAGAAACCTGTTGTAATTCACTAACTCGCTCTGTACTCATTCGTCTTCTAGTCATATTTGATTTAAACTCCATATTCCTGTGTTTCTTGGTGTGCGCGCGCACACGGTAATTCGATAAATCGTTCTTCTGTTTCCCATTAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008610 lipid biosynthetic process biological_process
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0008609 alkylglycerone-phosphate synthase activity molecular_function

KEGG:

id description
K00803 AGPS, agpS; alkyldihydroxyacetonephosphate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100157 lncRNA upstream 657 4572676 ~ 4575525 (+) False LOC122351246
XR_006251713.1 lncRNA upstream 746 4572574 ~ 4575436 (+) True LOC122351246
TU100155 lncRNA upstream 752 4572676 ~ 4575430 (+) False LOC122351246
TU100146 lncRNA upstream 17154 4523286 ~ 4559028 (+) False G67717
TU100097 lncRNA upstream 171972 4351701 ~ 4404210 (+) True G67680
TU100192 lncRNA downstream 66472 4677450 ~ 4685181 (+) True G67752
TU100248 lncRNA downstream 167379 4778357 ~ 4780535 (+) True G67769
TU100273 lncRNA downstream 212448 4823426 ~ 4823776 (+) True G67782
TU100322 lncRNA downstream 259207 4870185 ~ 4870882 (+) True G67812
TU100349 lncRNA downstream 288507 4899485 ~ 4954081 (+) True G67826
XM_043249762.1 mRNA upstream 20433 4547501 ~ 4555749 (+) True hnrnpa3
XM_043249761.1 mRNA upstream 23005 4547501 ~ 4553177 (+) False hnrnpa3
XM_043249716.1 mRNA upstream 152842 4417288 ~ 4423340 (+) True hoxd3a
XM_043249717.1 mRNA upstream 163022 4409895 ~ 4413160 (+) True hoxd4a
XM_043248300.1 mRNA upstream 175110 4398723 ~ 4401072 (+) True hoxd9a
XM_043248346.1 mRNA downstream 91708 4702686 ~ 4706137 (+) True si:ch211-222f23.6
XM_043249767.1 mRNA downstream 98075 4709053 ~ 4716912 (+) False rbm45
XM_043248632.1 mRNA downstream 109577 4720555 ~ 4772214 (+) True osbpl6
XM_043248634.1 mRNA downstream 109577 4720555 ~ 4772214 (+) False osbpl6
XM_043248636.1 mRNA downstream 109577 4720555 ~ 4772214 (+) False osbpl6
TU100144 other upstream 13580 4557143 ~ 4562602 (+) True G67717
TU100101 other upstream 163040 4410876 ~ 4413142 (+) False hoxd4a
TU100018 other upstream 354011 4141054 ~ 4222171 (+) True G67630
TU100016 other upstream 355787 4217050 ~ 4220395 (+) False G67630
XR_006251811.1 other upstream 450732 4120527 ~ 4125450 (+) False scrn3
XR_006251862.1 other downstream 98075 4709053 ~ 4717233 (+) True rbm45
TU100423 other downstream 404655 5015633 ~ 5018338 (+) True c9h2orf76
TU100453 other downstream 529235 5140213 ~ 5142152 (+) False ndufb3
unassigned_transcript_1318 other downstream 794251 5405229 ~ 5405301 (+) True trnar-ccu_4
unassigned_transcript_1319 other downstream 794925 5405903 ~ 5405975 (+) True trnar-ccu_5

Expression Profile