RNA id: XM_043249607.1


Basic Information

Item Value
RNA id XM_043249607.1
length 6568
RNA type mRNA
GC content 0.41
exon number 6
gene id csrnp3
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 24142666 ~ 24193802 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGCCTGCACCATTGTTTCTTCTGTCAGAGGTGTATCTGCGGCAGATGCCGGTTCTGCACGAACGCGTCGTTCCGCTCGTCGTAAAATCTGCgatgtgtgtttgattttatCCGGCGCGTACAGCATATGATGAAAGAGGCGGCAGCGTGCGATCATCTGACGGTGATTTATCAGTATGAATGCCATGAGCGGAATCCTTAAGAGGAAGTTTGAGGAGGTGGAGGGAGCGTCACCCTGCTCCTCTCTGAGGGagtctgaggaggaggagatcTCCAGCACTGAGAGCGGAGACAGCAGCGACAGCGTCAACCCGTCAGCCTCGCACTTCAGCCACTCTTCATCAGCATCGTCCTCTTCATCAACGCACGCACTGCAGCGCACAGCGTCCTCGATACTGAAGAGGGAGAAGCGGATGAGGACGAGGAGGGTCCACTTCGAGAAGGTGACCGTGTATTACTTCAGCCGGAGGCAGGGCTTCACCAGCGTGCCCAGTCAGGGTGGCAGCACGCTGGGCATGTCCAGCAGACACAGCTGCGTGAGGCAGTACACGCTGGGAGAGTTCGCCATGGAGCAGGAGAGAATCCACAGAGACATGCTCCGAGATCACCTGAAAGAGGAGAAACTCAACTCCATTCGGCTGCGGTTGACGAAGAACGGCTCGGTGGAGTCCGAGGAGGCCAACGCTCTCACGCTGGATGACATCTCTGACGATGACCTGGATATTGATAACACAGAGGTGGATGAATACTTTTTCCTTCAGCCGCTGACCACTAAGAAGCGGCGCGCTCTGCTGCGCTCATCTGGCGTCAAGAAGATCGATGTGGAGGAGAAACATGAGCTACGGGCCATCCGGGTGTCCAGGGAAGACTGCGGCTGCGACTGCAGACTCTTCTGTGACCCAGAGACCTGCACATGTAGCCTCGCTGGCATCAAGTGTCAGGTGGACCGCATGTCGTTCCCGTGCGGCTGCACGAAAGAGGGCTGCAGCAACGCAGCCGGCAGGATCGAGTTCAACCCCATCCGAGTTCGGACTCACTTCCTGCACACCATCATGAAGCTGGAACTCGAGAAGAGCCGCGAGCAGCAGCAGAACTCCGGCGTCGTCGCGCCGACCGGAAACGGTTTCCACGGCGACCCGAACGGTCACTGCAGCCCGCTGGCGACAGGCCAGCATGCGCTGGAATACGCGATCCCGGACACGGTACCGCAGACCACCATCATGCATCTCCAGGCCGGCGACGACATGGACGACACTttagaggaggaggaggaggaggaggaggaagaagacgACGAGGATGAGGAAGATGACGAAGAGGACGAAGATGACGAAGAAGATGAGAACGAAGACGACGAGGACGAAAGCAGCAGTCTCTGCAGTCTGTCTGACTCCAGCACGCAGAGTTTAGCGAACAGCGACTCTGAGGAGGAAGACGACAATGAGGACGAAGACAAGGCGGAAGAGTTCGACACAGGATTGGCCAATAGTGAAGTGGCTCCGCCCCCTTCCGTGATGTGTTACTCTGAGAATACGGTCGCATCCGACAACCAAACCAACGGCAACTCCTACTACATCAATTCCACCGCGGAGTACTACCAAATGGAAAACGCTACTCCGCCCACACTTTTAGCCTCCGCCAACCAATCTAGTGAGCCCTACGTAGGAGACACGGCGTCTTATCAAGACAGGGTTAATGAATCCAGTAGGGTCATGTCTCAGGGTCCTTACAATGTGACCACTGACCAGTACACGGACTACTCCCAGCAGCCCGAGCAGCCATACGCCAATCACCACTTGGCCGTGATTGGCTGTTGCGCCTCAGAGCCGGATAAAAGCGTCCAATCCAAAGGGACCTTCCTCAGCCAATCAGGAGAGCTGAGCCAGATGGAATTCCAAAACTATCTGAACAACAATACACAGGATACGAGTTACAACGCCAACGGGAACTGTTACGTAGCTGAACAGCCAAAGGAGATGTCTCACAATCTGCCTGAAGTTTCGCTAGCGGACAACACGAAAGGACCTACTTTACTGGACGCTTTCGCTGAGCCCACTCCGGTTTAGATTCAGAGAGCAGCGCGAGAGTATAAAAGCAGCCTTCGATTCTGCACATCGACGTTTCGTTTTCCTGTTTAACGTTTGGCGGatccaaaaatatgtatttttactgaACTTTGCAAAGAACAAAAACGATTTAAACTGCAAAATCAGAGCGTATAAGCTTTAGGTCGGAAAAACTCTACGCAAGTACGTTAACGCAAACGCTTCTAGCTACGCAAACTCGATTTGAATACGCAATGGGTCTTATTCACTGATAAtagaatattttgcatttttgcatacGTACAGGAATATTTCTTATGAAATGTGTCTATGTGCGTTCTCAAACTCAACTGACTGTagtaatttgcataaaacaCACCTATGCCATTTCCAAGCTTATTTTTCGCAAACAATTATCACTTTTAACCAGGGCCATCCATAACAAGGTGGTGAAAATCCATCTTAACATGATTAtaatatgattaatttaatCTTAACGTGATTATAATGCCaccaataatttttttcatacgCATGGTTTCAGTTGCTCTAGTTTTTtccatatatttacatacaattttTGCACGAAACGTCTTGATGTGTTCATATTcatttgcacacatttttaaGCACAAATTCATGCGTACGAGCGCTTAGTAATAAATGAGAcccattgtttttattttaatcaacatACATTAGTATGCTGCCCCCTTGAGGTTACCACTAGAGCAGGAACTTAAAGAGACAGTCCACTTAAAActgaaacacttttattatttactcacccttacgTCATTCTGAACCCGTTTTAAGacgataaaaataaataatttgtctaTACATAAAGGTAAATGGAGTCCAATATAGTCCAGCGCTGTTAACGCTAACTTCTTGTATGTTGtgcagaagcaaaaaaaaaaaagctcggaaagacatgagggtgaataaaagacagaattgtaatttttggggtgaacttcAGGTCCACGCTTGTAAAATGTCGGCCGAGCGTTTACGTACTGGCGCAAAGTCTATTACTGGCCTTAGGCTCGTGCAATGTTTCTTGTAATTTCAAAAGTTCtagttttgagcagaaatgtgGATAGAACTTTTCTATGTATCTGTGTCAGTGgtgcaaaaaagaaaacgaaaaaaaaaaaaagattgttgcTGTTAGTGTTCTGAAGTAAGTGTATATCTAAATGTTtgataaaagcatgttttgttttggggttttttttagctttcatcGCTGGTTTATGGTTTTGTAAGAGTTCGATgtactgtaaaagaaaataatactgttGCGTTTTCGTACACATACTTCATGCTTTAAAGAGTTGGTGAAAGCATGAAAACGGCTCTTAAAATGTGTGCTGTTCATTTGCCTTTGCTTACAAAACCAAAACCGCATTTAAGTTGTGAACACGATACATTTCCTCAACATAATTGCACTTTTCCATTGGCTGATATTATACAGAACCGCAACCAATTGTTACCTGAACACTAAAGGGGGCGGGGCTATCTGGTACCGTGCCATGACTAAGGCTGCGTTTGGAATGGAATACTTGCTTACTACTTACTGCATAATATATTATCCGTATACTAATCTGTATACTACGGAAGCTCGTTTCCAccacaggataaaaaaaaaataatgcattttttatattttttctgcttATAATTTTTGATGATGATGCAATGATGATTTTTCTGAATTGCGAGACGTTGGGCATCCCATGTTTGAATTCTCCTCCCAACGCACTTCCCGTCAACTCTAAACTATCCTATCACAgcaaaacgaaaacaaaaaagtaaaaatacgtATTCGTAAAAAAACTGCGAGATAAATATCCGACTCGCTTTCTCACAATTGCTAGTTTACGTCTAGCAGCTGTTTTTAGTTtccaacacaaaataaaaaaaaaaaaactgaattcaatttagatttttctagCAATTGCGAAATGACGTCGTACAGTTCCAAGTTTATATCTTGcgattttttgccatttttctcagaattctgaGACTGAAAAGTctgaactgtgagatataaagtgatagtcactctttttattttctcatcgCGTGGCAGAAACAAGCTCTTATAGTATACTGgcaactgatttaaaataaaaattttcatataaaaaaatcttatgaaACATTTGGATACATATATGGACATTTTTGGATGCAGTATGGTGTGCATATACATACCGTGTGTATATAGTAGTATGTTAGCGTGCTATTCCGAACACAGCCCtagattatgtttttataacataTCTCCAAGTTTTTAATGGAGACAtgaaggatgtttttttttgatgacaCTAACAagaaatatatatcatatctatctgcatttttttaaacggcAGATAGGAGACAGAAGGTAGTTAGATGACAGATTTAACTTTTTAGACCAGATAAACCGTAATGAAAATGATCAGACTCTCTGTCTTACGAAACTCTGAGATACTGAAGTCTTGAATTATCTTTGGGATTATACAGGGATTTCTGATGAAACGCACTTTGAAATGCATCAAGTTACTGCGAACGAAGCGTTCCGTTTCCGTCAGGCGaagatgatttttaaaagtgtttaaattatGAAGTCTAGAATACAAATTAACTCATATTAGGTTCGTGCAAGGTGATGCTTtacatttattgcataaaaGGTATCGAATGGATGGAGGCCAGGAAAGCGATTTTTCTCGATTTATAGTGATAAATATTTTACGgctatttaattgaaaaaaaatcagctttgaccGAATAAATCATTCTGAAGAGTAATTTGTGAAGTGCAATAGTTTACAGTGTGATAATGCCACACGTGAAAGCTAATGTTCGTTGAAAGGAGTGATTTCCTCCCGTGTTAAAGGGAAAGTTCGCTCAGAAAGAAGCATTccgtcattatttactcaccctcatccAGGTCGTTCTGAACTCGTACGCTGTTGTTTTgttccctaaaaaaaaaaaagagagaacttTTAGAAAGATATTCCTTCTACGACATGAGGGTGTTTACGTAATCACAGGATAATCgcttttgtgtgaaatattactttgaAGCACTGACGAGTTGAGATGAAGCCGTTTTTAACGCACAAACCTTAATGATGCATCTGTCGGTTTGTTTATCCTCTTGATTAAAGAGAGCCATTGTCCGATGGAGAATGTCCCTCAATAAGCTCAAGACAGGACAATCAAATGCCTTTTATGTCATCAACATTGTAGCGTGACCTCGTGGGGGCGGGAATGAAATAACCTGatctttaaaggtgaagtgtgtcgtTTAAAACATGCATCCCAGCTTTGACATTCAGAACCTTTGACCTCTAACCTTACGCGTTAAGCAAATCTTTATTCTACAAACGTGAAATATACCTCAAAATGCTATGCTTCGAGTGGTGCGCCATTACCTCTCCGTACGGAAAATCATTTGTGACacataatataaacatgcatttcatGAATATCAAATCGTTTAAAtagatgctttaaaatgtcatagattTTAAATTACGACAAATATTGTGACAAAAGTCGTAATTTtgacattacaaaaacaaatgagtCAAAATTATAAGATTTATGAGATTATGACTTTCATCTCATAATTTTgattttttgtcactttcccCTGTTGACGTAAtactttatttgtaattttttaatttttgtcaattttgtcTGTGAATGTCATCGTCATAATTgacttttttatcattttctggCTTTTGATGTCATTATTGCTTTTgtcataaattaaatgttttgtatttacataactCATCATTTCTAAATTTTGTCACAATTATGACGTTATGCTTCAgaatttttgtcactttttacttttaaaatatttgagacGTCAATATTCAACAATTTCATCATTTTGAGCATCCACCCagaacctaaaataaaacactcacGGCTGCCATTGGTGCAGAAATGACATACTTCGCCTTTAAAGATAAAACAAGTAAAGAAAGATGTGCTTTGAAATGACTGAAATACTGAATGTTGCAATGGTAATTTGGGCAGCAGCATTGGATCACTGCCTTGGCTTAAGTAACCGATGGATTACTTAAAAGTGAATgccttcattttttaattatttttgccaTTGTTTCAAATTCTACAAAAGCAAATTCACTCTGTGTTTTTGCCTTCTAGGATTTATTGTCTGGACATTGGTCCAGATTTGTCTTTACTTCACTTCTTGACTTACACACACAGTGCTGGTACAACAGACCTCAGTCTTTGATGCATTATGGGATATGAAAGACATGTGTACAGATGTAATGTCACTGAACCCTGTACTACAGCGGGACCGGATGAACTGGCAGCAGACAGGAGTCGTCATATCATGTTACCAGTTAGAATCGCAGTTCTCGTTCTGTTTTCAGTATTTCTTATGAATGATCTATTATGATGTGTATTTATTGTGCGTTCCTTAAACGGTATGTATTGAATAAAAATTCTCTTTGTTAAA

Function

GO: NA

KEGG:

id description
K17494 CSRNP; cysteine/serine-rich nuclear protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107925 lncRNA downstream 161428 23926223 ~ 23981238 (-) False G72929
TU107928 lncRNA downstream 161428 23926223 ~ 23981238 (-) True G72929
TU107919 lncRNA downstream 228780 23912173 ~ 23913886 (-) True G72927
TU107908 lncRNA downstream 230630 23911453 ~ 23912036 (-) True G72923
TU107885 lncRNA downstream 541774 23598987 ~ 23600892 (-) True G72904
TU108005 lncRNA upstream 59560 24253362 ~ 24285690 (-) True G72980
TU108009 lncRNA upstream 88189 24281991 ~ 24284165 (-) True G72984
TU108125 lncRNA upstream 319292 24513094 ~ 24521308 (-) True G73077
TU108133 lncRNA upstream 371079 24564881 ~ 24571112 (-) True G73084
TU108266 lncRNA upstream 545524 24739326 ~ 24745938 (-) True G73160
XM_043248992.1 mRNA downstream 104536 24029509 ~ 24038130 (-) True slc38a11
XM_043248989.1 mRNA downstream 113552 23981970 ~ 24029114 (-) False cobll1b
XM_043248987.1 mRNA downstream 113552 23981971 ~ 24029114 (-) True cobll1b
XM_043248988.1 mRNA downstream 113552 23981972 ~ 24029114 (-) False cobll1b
XM_043248991.1 mRNA downstream 131805 23981972 ~ 24010861 (-) False cobll1b
XM_043249564.1 mRNA upstream 231724 24425526 ~ 24482087 (-) True stk39
XM_043248138.1 mRNA upstream 335870 24529672 ~ 24533048 (-) True spc25
XM_043248139.1 mRNA upstream 335870 24529672 ~ 24532778 (-) False spc25
XM_043249351.1 mRNA upstream 340075 24533877 ~ 24558743 (-) False abcb11a
XM_043249350.1 mRNA upstream 340075 24533877 ~ 24558743 (-) True abcb11a
TU107931 other downstream 182341 23956219 ~ 23960325 (-) False grb14
TU107929 other downstream 211337 23930207 ~ 23931329 (-) True G72930
TU107329 other downstream 1631359 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 1835653 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 1918999 22171463 ~ 22223667 (-) False cerkl
TU108001 other upstream 26720 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 37433 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 77653 24271455 ~ 24280708 (-) True G72978
TU108324 other upstream 833783 25027585 ~ 25030965 (-) True G73201
TU108463 other upstream 1154976 25348778 ~ 25349640 (-) True G73301

Expression Profile