RNA id: XM_043249611.1


Basic Information

Item Value
RNA id XM_043249611.1
length 4647
RNA type mRNA
GC content 0.47
exon number 12
gene id il1rapl1a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10328731 ~ 10395230 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAGCCCGTCTTGAAGAGGAAACCCCCACAGGAGCTCTAGCTGCCGGATACCTGAGACATCTCAAATCATCCCTCTGACCGACGAGCGCACGGCGCGCCACGGAATGCGCAGGAGCGACCGACTGTCCGCTGGACGAGGGCGCACGGTCGAGCCATGGGTCCTTCTTCAGCAAGTTCTTAATGCATTATGATGTCCTAAAGTCATAGAGACCCCTGGAAATCCTCCGAATCCTCCTTAAGGCAGCGTCTGTATTGGAATAAACTATCAgctggtgattttttttctgttcggATGGATGATTTGGTCAGATTCCTCATTCATCGTGATGCGCGTTCATTCCTTTTCCAAGTGTCTTATTGACTGACCGCGGATCAATTTTTGGACGTGGGCTGACGGCTGGAGAGGAAGATGACAGCTCTCAACCCAGTGCTGTTCCTGCTCTGcggtgtctctgtgtctctgacTCTGAAGGTGGTGTCAAAGAGAGGCTCAGTGGACGGCTGCACTGATTGGTCCGTGGACTATCTGAAGTACCGGGTGTTACACGGAGAGCCGGTGAGGATAAAGTGTGCTCTGTTTTACGGTTATATCAGAGCCAACTACTCCCAGGCACAGAGCATTGGACTTAGTCTGATGTGGTATCGGAGTTCTGGGTTGGGACATGGCGACTTCGAAGAACCCATCTCCTTTGACGGGGTACGCATGAGCAAAGAGGAAGACGCCATCTGGTTTCGGCCTGCCGAGCTGCAGGACGCCGGTCTGTACTCCTGTGTTCTgagGAATTCCACATTTTGTATGAAGGTGTCTATGACTCTGTTGGTTGCTGATAATGACACAGCAGGATGTTATAACTCAAAACTGCGCTACACTGAGAAAGGAGAGCTGGGCAAGAGTAAAGACATCTCCTGTCCTGATATCCAGGATTACGTTCAGCCTGGAGAAAAACCACAGATAATGTGGTACAAGGAGTGTAACGTGCAGCAGTGGAGGAGCAGCGTGCTGCAGACCGCAGACATGCTCTCTATACAGGAAGTGAACGAGGAAGACATCGGCAACTACACCTGTGAGCTGGTTTTTGGAGGCTTCCTGGTGCGGAGGACGACCTATCTGAGCGTGACAGctcctCTGACTGAAGAGCCCCCCAGGATTCTCTTTCCCTCTGAAAACAAGCTCCTCACCATGGACGTGCAGCTCGGAAGTATGCTGAACCTGACATGCCGAGCCTTCTTTGGGTACAGTGGGGACATCAGTCCACTTGTTTACTGGATGAAAGGAGAGAAGTTCATCGAGGACATGGACCAGAGTCGCATTCGAGAGAGTGAAATCAAGACTGTCAGAGAACACCTGGGTGAACAGGAAGTGTCCATTACTCTGACCATAGATTCACTGGAGGAGGTAGATCTGGGTAATTATTCCTGTTATGCAGAAAACGGCAACGGGAGAAGACAAGCCAATGTACAGATTGGGAAACGAGTGGAGCTGATGTACACAGTGGAGTTAGCTGGAGGACTGGGTGCGATTCTTCTGCTGTTGGCTCTGTTATTGTCTGTGTATAAGTGCTACAGGATCGAGCTGCTGCTCTGCTACAGGCATCACTTTGGTGGGGAGGATACGGACGGAGAAAATAAAGAGTACGATGCGTACCTGTCCTACAGTAAGGTTGAGCTGGATCAGTGGGGTCAGGAATTACAGGAAGAGGAGCGCTTTGCTCTGGAGATCCTCCCTGATGTCCTGGAGAAACATTACGGATACAAACTCTTCATCCCCGACCGAGATCTCATTCCTACCAGCAGTATGAGCAGTCAACATTACCAGGATGACACACATCTTCTTAGAGCGTACATAGAGGACGTGTCGCGCTGCGTGGACATGAGTAAACGGCTGATCATCGTGCTGACCCCCAGCTACGTGCTGCGTCGCGGGTGGAGTATATTTGAGCTGGAGTCCCGTCTGCGCAACTCTCTGGTTTCAGGGGACATTAAAGTGATCTTAATCGAGTGTGCCGATCTGCGAGGAGTCATTAACTACCAGGAGGTGGAGGAGTTAAAACAATCCATTAAATGCCTGAGCGTGGTGCACTGGAACGGCCCGCAGAGCAACAAGCCCGGCTCTCGCTTCTGGAAGCAGCTCCGCTACACCATGCCATACCGCCGCCCCCAGCAAACCCTGACCAATCACGCGCTGGACGCCAGCGAACCCGGCCCCTTCGCCGACCTGCAGACCGTCTCGGCCATCTCCATGGCAACGGCCACGTCCGCCGCCTTGGCACCGGCTCACCCGGAGCTGCGCCCGTCCCTGCGGAGCTCGTACCGCTCGCATTCGCTGGCACGGCAGAAACACTCACACTACCGCAGCTACGACTACGAGCTGCCCTTCACGGCCGGAGGAACGCTGCCGCCCCAGCACACCTACTGCAACCTGCCCCTTACCCTCCTGAACGGCCAGCGGCCCGTCAACAACAAGACCCTGCGCCAGCACAGCCTGGATGAGCACCACGGCAACAATGCCATGCTCCCGCTGCTGCCCAGAGAGACCAGCATCTCCAGCGTCATCTGGTAAACACGGAGAATCCCGAACGCGCACGGTTCGGGCCGCCTGGCACACTGGGGACTGAATAAGCTGGCACACAGCACAGGACACGATGAGGTTAGTGGCTTCCTGTGAGCGGAACGATGGCTCTGTCCATGCTAAGTGGGTCTGAGGATGAGCGTTTAGATCCGGCCGCGAGGGACGTCGCATCTGTAGGCGTGAACTGAGCATATAAAGTCACACCACATGGAGGTATACAGGGTCTCGTGTAGATGTTAGCGTTATATTTGTAGCACCGCTGTCTTCCTGTCTCCATGTTGGGTTTGATCACGCCATCTATTTTTACTCGTTGACGCTTGATGCTTTTCGTTTTGTCCCTTGCTCTTTTTTTAGGTTCGACATGGACATTTGATTgagattttttgctttttctacCTTCTTTTGAAACGGACTGAAATATTCCTCGTTTGATTTTAGCTACTGTCGTTTTTGCTCGGAAGCTACTGCGTTTTGTTCCGTCCCTCTTTCTGTTGTCCGATGTAAGGTATgtatttatggttttaattgCAAAATTTTCAAGAAggaaatatattacaaattatgcaaaatataggAAAGCCTAAAGGGGTCGACAGAGGTGATCGGAGAGCGGTGCTGTCTTCTTTTACCAGAGGATCAGCACCATTTCTCAAATATTAAGGGGATTTTAAATGATgagaaatctatttttatatctgAAGAGTGCTGATTCTCTCTAATACCACAGGGTCAATGGGACAATGGGACTGGAGACTCTCTTATTTGTGAATTTGGGTATTTTATACAGTTTGCTACGTTGTTCTCATCTGTGgagaaaaggaaatgttttatgttacaACTTCTGAAACAATAATCAACtgcatatttgtttgtattttttttatgttcatagtCCATAGGACTTTTGATCCACAGACAGACCTTTTCACTTTCTTTCACATTTCTAATGTTTAACTCTCAGTCTGACGTCTTAACACACTGGCTACATGCTTGTCTTTTTCTCCTCTAGCTGCTGTGTGACTCAGATACATGCTGGCATGTTTCACAGAGGAACGCAGGCCTGTATACTCGCATTCTAGTATAGAGTGTCAGATAACTCTGCTTGATAACATACcatatgatttaataaatgccCAAAGTCAACATGTATTTGTTGTATGTTGTCTAGAGGTTTTCCTGATCTAGGGGTCTTCACTTATGGCAGCATGTACTGACTCTAAGGGGGAAAAACATAAAGCTAAAATCAGAACCAAGAGGTTTGACAGTAAAAAGAGGTctaactgtataaaaaaaacgaaaaaaaaaaaaaatctgaaactatTCCTGTAATTTCTTTTCTCctatttttctgttctttttttttttttttcaaaattgagttgcaaaaaaattgtttataaaaataattagaattatGTATGAATGTTTACCTCTTGAGTATGCATAGAGACTAGTTGTGTATCCTGATttgaatatttactgtattatgaACAACAGCTATCACAGAGAGATGTGTGATCTCTCTAGAGGCacaatcatttttctttttatattgtttctcACTGTGTACAGTAAAGTCACAAACCACTATAAGCTGGTCGGTGAAATtttgtgcacgtgtgtgtgtgtgtgtgtgtgtgtgggtgggtggagTGCACTGGTTTGgatggtttatggggacacaatTTGTATGATGACATGGGTATGATAGAGGTAATATGGATgtggggtaggtttaggtgtagggttggggATAGAATATACAATTTGTACAGTAGAAAAACCATTGCACCTATGGAGAGCACCCATAAACCACCAATACCAacacaagtgtgtgtgaagAAGTGTATCAGACCTGATGTGAATTCTCTCACAGTGGGTTGTTTGTGTAAGACACTAATTTGAGAAACGAACACAAAGTTTTAGGTTCTAGGTGAGTTGCTAAAACTGAATATTTCAATTATGCTTTTGAACAAAATGCTACATACTGGATACTACAGCTGAATAagcaaaaaatgatttcatatcATATGCATATGAATGCAcctctttaaataaaagagaaaaacaacatcTAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004908 interleukin-1 receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251805.1 lncRNA upstream 149351 10175048 ~ 10179380 (+) True LOC122351843
TU102130 lncRNA upstream 153948 10173283 ~ 10174783 (+) False si:dkey-100n23.5
TU102110 lncRNA upstream 220547 10107840 ~ 10108184 (+) True G69042
TU102106 lncRNA upstream 227014 10092350 ~ 10101717 (+) False piga
TU102183 lncRNA downstream 25252 10420482 ~ 10420692 (+) True G69089
TU102184 lncRNA downstream 26813 10422043 ~ 10422253 (+) True G69090
XR_006251822.1 lncRNA downstream 27984 10423214 ~ 10435142 (+) False LOC122351945
TU102185 lncRNA downstream 28085 10423315 ~ 10423577 (+) False LOC122351945
XR_006251821.1 lncRNA downstream 28760 10423990 ~ 10435142 (+) True LOC122351945
XM_043248858.1 mRNA upstream 48828 10262378 ~ 10279903 (+) True dcbld2
XM_043248806.1 mRNA upstream 102079 10208849 ~ 10226652 (+) True LOC122351607
XM_043249200.1 mRNA upstream 127903 10185746 ~ 10200828 (+) True impg2a
XM_043249198.1 mRNA upstream 127903 10185746 ~ 10200828 (+) False impg2a
XM_043249199.1 mRNA upstream 127903 10185746 ~ 10200828 (+) False impg2a
XM_043248100.1 mRNA downstream 7115 10402345 ~ 10405495 (+) False LOC122351198
XM_043248099.1 mRNA downstream 7120 10402350 ~ 10405488 (+) True LOC122351198
XM_043248101.1 mRNA downstream 7128 10402358 ~ 10405472 (+) False LOC122351198
XM_043248102.1 mRNA downstream 10753 10405983 ~ 10408038 (+) True LOC122351200
XM_043248103.1 mRNA downstream 11027 10406257 ~ 10408038 (+) False LOC122351200
XR_006251853.1 other upstream 772084 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 1179065 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 1179070 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 1462834 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 1895248 8431145 ~ 8433483 (+) False sumo3b
TU102754 other downstream 1088207 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 1651269 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 2232305 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 2335606 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 2337403 12732633 ~ 12741060 (+) False LOC122351618

Expression Profile