RNA id: XM_043249636.1


Basic Information

Item Value
RNA id XM_043249636.1
length 7811
RNA type mRNA
GC content 0.49
exon number 27
gene id hdac4
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 23005838 ~ 23244247 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCTGGAGGACATGCGCCTGGGACTCGACACGTGATCCGCTCGCCACAATCCAGTATGGCGGAATCCGTCGGCGAGTGGATCCGTCGTTGGCGCGCTCTCCAACGGGAATAAAGTCCGGAGCGTTGCGTCCGATCGCGGCGGAGCTGCGGAGAGTTCAATCTTATCGAGCGAAGAGGAACCGACGCACAGAGCTGGATTACGGCCAGAGGGGGCACTATGAGCCTCTGAGATCGTCCTTTCTTTCCCGTCCCGTGTCTCTTTTGACTCGTCTTCCCATTCAACAGTGGATGGTGACCAGCCAACAAGCCCCAGAGGAGCCGTGAGGTGTTTCTCACATCCTCATCTGCCAGGACACGCTCCTCTCATTATCAAGCCAGTCACTTCAGAGAAAGCTGCCACCTTCGTCACAATGAGTTCCCACAGCCGCCCAGATGGACTTCCCAGTAAAGAACAGCCACTGGAACTTCTGAAGCCATCTGGAGTCAATCACATTCCTCCTGTTGATGTGAGTGCGGCGCTGCCACTGCAAGTGCCGCCTTCTGCCATCCCCATGGACCTGCGTGTGGACCACCAGTTCGCCCTGGCGCCGTCGGACCCGGCCCAGCGCGAgcagcagctgcagcaggaGCTTCTGGCCCTCAAGCAGAAACAGCAGATACAGAGGCAGCTCCTGATCGCAGAGTTTCAGCGGCAGCACGAGCAGCTCTCGCGCCAGCATGAAGCACAGCTGCAGGAGCATGTCAAGCATCAGCAGGACCTCCTGGCCCTGAAACATCAGCAGGAGCTCCTAGAACACCAGCGGAAGTTGGAGCGCCATCGTCAGGAACAGGAGCTGGAGAAACAGCAGCGGGAACAGAAGCTCCAGTTGCTCAAAAACAAAGAACGTGGCCAAGAAAGCGCTGTGGCGAGCACTGAGGTGAAGATGAGGTTGCAGGAGTTTGTCCTCAACAAAAAGAAAGCGCTGGCCCAGAGGAGCCTCAACCACTGCCTGCCCAACGACCCACGCTACTGGTACGGGAAAACCCAGCACAGCTCCTTGGACCAGAGCTCGCCACCTCAGACAGGGATTTCCACTTACAACCACCCGGTGCTGGGAATGTACGACCCCAAAGACGACTTCCCGCTCCGCAAGACGGCATCTGAGCCCAACCTGAAGCTTCGATCCAGACTGAAGCAGAAAGTTACGGAGCGCAGAAGTAGCCCGCTGCTTCGGAGGAAGGACGGGCCGATCACCACTGCGAAGAAGCGCTCTCTGGACATGGCAGAATCGGCATGCAGCAGCGCTCCTGGTTCTGGTCCGAGTTCACCTAACAACAGTTCAAACAACATTACCAATGAGAACGGCATCGCTGGATCGATCTCTAGCAGTCCAGTGGAGCCATCTTTGGCGCACAGACTCACGGGCAGAGAGGGTCCTGTTAGCCAGCTGTCTCTGTACACATCGCCCTCCCTTCCCAACATCACCCTGGGCCTGCCAGCCACCGGCCCCTCCAGCGTGGCGTCTGGCCAACAGGATGGTGACAGAATGGCAGTGCCAGGCTTGCAGCCAGGAATACCCATAACCACTCCGTTCATGCCAGGAGCCCACCTGCCTTCGTACCTGGCTGCGTCCAACTTAGAGCGGGAGGGCGGCTCGGCACACAACACCCTCCTGCAGCATATGGTGCTTCTGGAGCAGTCGGCCGCACAGAACTCCCTGGTCGCAGGCCTGGGGGGCGTGTCCCTGCAGTCGCATCCCATCCACAAGCTCCGGCAGCATCGGCCCCTCGGGCGCACGCAGTCGGCCCCCCTACCCCAGAATGCCCAGGCTCTGCAACAGCTGGTGGTTCAACAGCAACACCAGCAGTTCCTGGAAAAACACAAGCAACAgttccagcagcagcagctccacATCAGCAAGATGATGGCTAAGCCGAACGAGCCGGGCCGTCAGCACGAGAGCCACCCGGAGGAGACGGAGGAGGAGCTGAGGGAGCACCAGGGCCTGGGCGACTCCACGGAGGCTCTTCCTCACGGGGTCACCATCAAACAGGAACCTCCCGATGAGCAGGATGAAGAGTTCCAGCAAAGAGAGAGGCAAGCCGAGGAAGAGCTGCTCTTCAGACAGCAAGCTCTCCTCTTGGAGCAACAGAGGATCCATCAGCTGAGGAACTATCAGGCATCTATGGAAGCGGCCGGTCTGTCTGTGACCTTCCCAGGCCATCGGCCCCTGTCCAGAGCACAATCATCCCCGGCCTCTGCAACCTTTCCTATTGTGGTGCAGGAACCTCCAGCCAAACCGCGCTTTACCACCGGTCTGGTGTACGACACCCTGATGCAGAAACACCAGTGCATGTGTGGAAACAGTAACATCCACCCCGAACACGCCGGGCGCATCCAGAGCATCTGGTCACGACTGCAGGAGACGGGGCTGCGCGGACAGTGTGAGtgcattcgAGGCAGGAAAGCCACTCTGGAGGAGCTTCAGACGGTCCACACTGAAGCCCATGTGCTGCTTTACGGAACCAACCCTCTCAGACAGAAACTGGACAGCTCAGTGACACCCATGTTCGTGAGACTGCCGTGCGGAGGAATCGGGGTTGACAGTGACACTATCTGGAATGAAGTGCACTCGTCCAGTGCTGCTCGTCTGGCCGTGGGATCTGTAGTGGATCTGGTGTTTAAAGTGGCTTCAGGAGAGCTGAGGAACGGCTTTGCTGTGGTACGACCTCCAGGACATCACGCCGAGGAAAGCACTCCCATGGGATTTTGCTATTTCAACTCGGTCGCCATTGCAGCCAAACTCCTGCAGCAGAGACTCAACGTCAGTAAGATTCTCATTGTAGACTGGGATGTTCACCATGGAAATGGGACTCAGCAGGCCTTCTACAGTGACCCTAACGTGCTGTACGTGTCTCTCCATCGCTACGATGACGGGAACTTTTTCCCTGGCAGTGGAGCCCCTGATGAGGTGGGCATCGGTCCAGGCATGGGCTTTAACGTGAACATGGCCTTCACCGGAGGTCTGGAGCCACCCATGGGAGACGCAGACTATCTGGCAGCATTCAGgacgGTGGTGATGCCAATCGCGAACGAGTTCGCTCCAGACGTGGTGCTGGTTTCTTCGGGCTTCGACGCTGTGGAGGGGCATGCACCGCCTCTGGGAGGATACAAGCTCACGGCCAAATGTTTTGGCTACCTGACCAAGCAGCTGATGGGACTGGCCGGCGGCCGGCTGGTGCTCGCACTGGAGGGGGGTCACGACCTCACCGCCATTTGCGATGCCTCCGAAGCATGTGTTTCTGCTTTGCTTGGAAACGAGTTGGACCCTCTTCCTGAAGACGTGCTACAACAGAGGCCGAACTCCAACGCCATCCACTCCATGGAGAAAGTTCTGGAAGTCCACAGTAAATACTGGCGCTCGCTGCAGAGATCTGCCTCGACTCTGGGCTACTCACTGCTGGAGGCTCAGAGATGTGAAACTGAAGAGGCAGAGACGGTGACCGCCATGGCCTCCCTGTCTGTGGCCAACAAGCACATTGGAAAGAGGACAGAGGAGGAGCCTATGGAAGAGGAGCCTCCATTGTAGAAGGTCCGATCGACTGCCTTGGTGACCCTCTCGGCTCAGAGCCTCTTCAAGGCCTCTGACGTCGCTCTACTCTCTCCATCCCGTTTCATTTTTTGTCCCACGATGTGCGCGCTTTGAGCACGGGATCCGAAACGGCCTGAAGAAATCTCCGTGACACCCAGAGCGCGACAAACGTCTCGGCCGTGTTAGTCTGTCTCTGTCCGTGGCAGAACGTCCGGGACCGTGTAACCTGGTCTGTCCGCAGGGACACTTAACTAATTTTGAGCAGGACATAGACTCACGTTTCATTGTTAGATGTGAGAGCTGGTGCTTTCGACATGaactttttcattgttttccaGAGCCACTATATGACTGATTTCGGCTGTTACGGCctacgtttttttatttgtcgtctctctctctgttcgtttgtctgtctttcttttatccttggagaaaaaaaaaaaaaaaaaaaaacggactCGTTCCATTCGCAATTCGAATAACTGCTTCACGAGGGTGGACGATGTGATCGGGAGAGCGATCGAGGGATTCTGGGAAGCCCGACGGAGAGTCGACAATGCGAGTTTGTGCCTTTTTCAAAAGATGGATCCAGAAGAACATTGCCTTAAACTAGTTACAGGAGGGAAGACGTCTCGCCGTCTCGGTATTTCTTAACAAGGCTGGCCTGAAGAATCGAGAAACCCTCAGCATGTTTACCAGGAACTCCCTGCAGATATCTTCATGTTTCATACGCATTATGACCTGTTTTCTGTTCCTTCATTTTTTACTGTGCTTGTGTTGGACGTTACATGACTTTAAGTGTCACTGACAAACTTTAAGGTAGTTGCCAGCTATCCAAGGGCATAAACGTTCGATCGAATTCTCCAGCGCTTTAGACAGCAAGCCAATGTAGCGACTCGTTTCAACTCTTAATGACCAAATACGCACCTCCTCCTCCGAAAAGTTGACCAGCATGCAGCTTTCCATCTGCCAAGTTACGAATTCAACCGTCGTAGTTTATCAGCGCCGACAAGCATGAGTTTTAGCTGCGAGCATATAGGATAGGGCTGCGATGACCTCGCGTCATACGATTTGTAGTTCGAGACAGACTTTCTATTTTTCCTTCTCTCGACACGTTGTACTTTTATATAGCTATGAATGTCTAGTATTCCGGTTACTTTACAGTTAATCAAAGGGCACTAGCATATCACTACTATTATTCTACTCAGCAGATGGTCAGTTTTATTGACACCTTCGAAAACAAGCGGAAAAGGGCTGGTTACCGATTTTAAATGTACCACTGAGCCTTCAGACGTGCCACCTGGTGAGATTTAGCGCTGGTTTCCTGCCGACCTGGCCTGAGCGAGGAGGGTTACGGGCCTTTCGCTAGGGGCGGGTGCTACCGAACATGTGCCCGTCACATGACACAATCCAGGAAGTAGCGGGACCACCAGCTTCCACTCAGAAAACAATCGTAACGCCTCTGAGACAACTGTGATACTCAGACAATCTGCATGGGACATTGACGTAGTTTCGGAGCCGCGGCAGCGCTCCGAAGCGGCACATAGAACTGTATATATACGCAATTATGCATGCTGACAGTAGATCGTTTGGCTTGACTTTGATTGTACATTGAACTTTTCGATTCTGGACTGATGAAGAGGCGATAATTTGTTTGACAGCCCCTGACTTGTGTTTAGCCTCTCGGCAACTACCTTcggcattttttttctctgtgtcaTGTTCAATATGAGATGCATTAAGGCGGGAGATTTGACTCACTCGACTTCGTTTTTATATATGCCTATCACATATGACTACTCCACTTTGGGTTCGTACACCCGTTATTTTCTTCGTTTGTTCGTATTAATGTccagtttttttgtttcgttttgtaCTTTTTGGATTATTTACTTGTTCATTTGTCAGTCTTTATGTAGTTGACAATGTGTTTTACATGCTTCTGTCTTTAGTTTCTTGTTTTAGAGAGTAAcaagccttttttttaatttgttttatcttGGTTTTTTTGTATGCGGTGGGAGGGAGATGCTTTTACTTTGTATAATGATTCCGACAATTGTGTATTTACTACGTTCTGTTCATAGTAGATTTATATTACAAAGATctatagatatattatatattataaagattGCAGACTCGAATAAGAGAACTAGTATTGCAAAGTGATATATTTCAGTACGTGGTCTGGCTTCGGCCGTTGCTGGTTCCACTGAAGGCACTGTTTATTGGTTTCATGCATTCACAGTAGCATTACTCTGGCACCGTATAAACTCTTGATCAAACGGATCTTTGTGGTTCCAGGCTTCAGTTAAActctaaaacaaaatattatggACTGACACTGTACATTTCCATTGGTATAAGTCCATTTGGATAGACCAACTAGACTAGATGCTGACATCACAGTGATCCTTCTGTGGGGTACATCCAAGATggattttagttattttagcgTATTTTGAAATAGGTATGAATTACTTTAGCCTTTCACTTTCAACAACGTGTCCAGGTTCTATCTCACCCGGAAAAAATGACATAAGAAATtgcattttgcttaaaaaaaaaaaattaaaaacaaggcCAACAAAGCGAAACAGGCTCAACCAATGATGTTAGTCTGGAGGTGTGGCTGTCTGTTTGTTTGACCAATGGCAGACATGGgagtttttcaaaatatttggaGGTGCAGAAATTATACACACTGGTGTAGAAATTGCATGTAAATTTcacacaaaattacaatttaacaattaaattttgaaaacaactttaaatatgaaatgatgcATTGTTTCATATGTATTCGTTAAATTGTGGTGGGAGAAAATGTGCTTAGTTATCATGATGACAATTTCATAATGTGAGAAATCGCCAAAAAACTTTATGCGAAATACAGTTCCTTATTCGCATCCTTTTTGAGAGTGGAATGCAACCTGGACACGATTGCGTGAGATTGTTAGCGTTTCATTTCGCGGTAACGATATCAGTGATCGTTCTCTGGGGTTTTTTCTGTTTCGTAAAAAATCTTGTTACTCTTATCAAGCATGATCTATTTTGGGCATTTTTGCAGTATCATATCCAGACCAAGCCCATCGAATCTCATCCGAATTGCTTTCAAGAATGAAGTGCGAAGGCTGACACTGATTTGAAAGTGTCCCGAAAACGTAAAGCGACATTCCCAAAGAGTCTCATATTACTGTAGTAATACTCAAACGGACCATCACTACAAACCACTCTGCAATAATACTAACGGCAGCCTATCAGTACAGTCTTGTCAAAGGGACACTTCTATCCGGTTCATCCGGATAGTCATTTTCATTGctcttgttttatataaaaagaaaaaaaactgcattccattcgttttttttttgtttgtttgtttgtttgtttttaaacctttCTTGTCATTCCTGCTAATTTGCCATGAGGTCTGGCCTGAGCTGTTGTTTATTTGCAGGCCAGGGTGAAgtttctttcattctctttcCTTCACAGCTGTAGATTTCTGCATGGTTTGTGCGTCAGCATGCCTGTCTGTCCTTGTAACATATTTGCACAAAGGAGGAACACGGGAGGGTTAAGGCTATGGAGGACGCATGGGATGGAAGCTCTTCTTTCCTCCTCTGTTTCTGGTCAGTAGTACACAGACGGATTGATGCTCTTGGTGTCCGATGGATGTgctttttacttgtttaaaaatggaatgaaagaaaaatgacttttgaatattttacaacaacaacaacaacaacaagaaagtTATCTAGCACTTGTGACAAACAGACTATAgactttattgtatttatgtagAGCATTGTTTTAGGTGAACTACACACTATGCCACACGTTAGACTGTCTGTGAGACTTCTTTTGCTTTCGTTTCTTTTCTGGTTTTTCTACTCTTCCTCGGGACGTATTTTTGGGCCTGGAGGAAGACTAGGAAAAGATTAGGGTCGTTCCTTTAGAAACATCTGGAATCATCAAAGGGCTTTTTCCAGATGCTTGTCAGATATATCTTCAGTTTgtccaaaagacaaaaaaaacacttatcaGCCAGTAATACCTGTGACCACTGTGGCTCGAGAACAGTTCTAGGTTtacaaaatgtaagaaatgcatattatttttgtcactttGTTTTTCCATTGTTACAATAGAACTTTTTCTTGGGACCTTTGCTCTAACGTTTGTCTTTGACATCAACTATAAAGTTCCTTGTTTTTGAA

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0090299 regulation of neural crest formation biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0000118 histone deacetylase complex cellular_component
GO:0004407 histone deacetylase activity molecular_function

KEGG:

id description
K11406 HDAC4_5; histone deacetylase 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107677 lncRNA downstream 2098 23003397 ~ 23003740 (-) True G72795
TU107661 lncRNA downstream 63822 22941815 ~ 22942016 (-) True G72780
TU107487 lncRNA downstream 114219 22828098 ~ 22891619 (-) True G72646
TU107450 lncRNA downstream 304819 22700729 ~ 22701019 (-) True G72615
TU107440 lncRNA downstream 338727 22666897 ~ 22667111 (-) True G72608
TU107687 lncRNA upstream 11831 23256078 ~ 23277786 (-) True G72803
TU107693 lncRNA upstream 24074 23268321 ~ 23268764 (-) True G72808
TU107694 lncRNA upstream 26847 23271094 ~ 23271519 (-) True G72809
TU107712 lncRNA upstream 64240 23308487 ~ 23350822 (-) False LOC122352044
TU107711 lncRNA upstream 76239 23320486 ~ 23350822 (-) False LOC122352044
XM_043248246.1 mRNA downstream 99526 22902448 ~ 22906312 (-) True agr1
XM_043249090.1 mRNA downstream 360091 22636895 ~ 22645747 (-) True itgb2
XM_043249493.1 mRNA downstream 369841 22622058 ~ 22635997 (-) False vil1
XM_043249492.1 mRNA downstream 371852 22622058 ~ 22633986 (-) True vil1
XM_043249032.1 mRNA downstream 385050 22616864 ~ 22620788 (-) False LOC122351761
XM_043249532.1 mRNA upstream 37267 23281514 ~ 23290139 (-) True LOC122352042
XM_043249020.1 mRNA upstream 146445 23390692 ~ 23410990 (-) True LOC122351748
XM_043249534.1 mRNA upstream 175015 23419262 ~ 23426434 (-) True gjc4b
XM_043249535.1 mRNA upstream 175015 23419262 ~ 23426000 (-) False gjc4b
XM_043249556.1 mRNA upstream 320132 23564379 ~ 23649560 (-) True LOC122352061
TU107329 other downstream 494531 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 698825 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 782171 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 1279018 21709288 ~ 21726820 (-) True G72363
TU106615 other downstream 2501948 20489164 ~ 20503890 (-) True G71938
TU107929 other upstream 685960 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 711972 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 976275 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 986988 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 1027208 24271455 ~ 24280708 (-) True G72978

Expression Profile