RNA id: XM_043249644.1


Basic Information

Item Value
RNA id XM_043249644.1
length 7331
RNA type mRNA
GC content 0.50
exon number 28
gene id thsd7ba
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9443125 ~ 9566997 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGGCTTCTGGACACTTCCTGGGAGGAATCTCCAGCAGTGGATACTTCATCCGGCAATCGCCAAAGGGTTATCTATTCTCACGGTCGGTGATGGTGTGACAGACACATCTTTCACGCTCTGATCTTCCCGAGGGGGAGCCACTAAGGATTAGCTGGCAGATGATGCATCAGGGGGAGGAGGAAAGGCCGTGTTTATCTGCTGTCCCTGTGTCACAGAGAGCTTCTGAGGAGCATTCAGCTGCCAGAGGCATCAGCGGGCCTCAGCCATCCAGCTGTTCACCTCACTGCCACAGCTAAAGTGATGAGTCCCAGCCTTCCCTTTCAGgacTAAAAGTGGACAGGACGTCAATGGGCTGGACTATGATTCTAAAAGATGACTCGGGTGTAACGGGCTGGACATGGCGCGTTGGGAACTACCTGCTGCTGTCTATGTCTCTAATTGGAATGCAAGTGAGGTCGGACCTGGAATTTCCAAAGGATAGACACTATGCGTGGAAAACGGGTCAGTGGGGCAGGTGTATGGGAGAAGAATGTGGAACTGGCGGGGTTCAATCCAGGACAGTGTGGTGCATCCACTCAGAAGGCTGGACCACGCACCACTCCAACTGCCGGCACTCCGACAAACCCGAGAGCCAGAGGCCTTGCTTTAAAGTGTGTGAGTGGCACCAAGACCTCTTCGAATGGGAGGTTTCAGAATGGGGGCCGTGCGTTCTAGCCTCATTCCATTCCAACGAGCTCAAACCAAGGATGACGGAGTGCATCACGGCCCAGCATGGCATCCAGAGGCGGAAGGTCCACTGCGTACGCACCTCAAACCGCACTGCTGTTACGGAGAGAATATGCGAGTTCTTTTCCCCGCGGCCAGCGCTCGAACAAGCCTGCTTGATCCCCTGCCCTCACGACTGCATCGTATCAGATTTCTCCTCCTGGTCCGGCTGCAGTCGAACATGCGGGATGGGTCTCCAGCATCGGACCCGACATGTTTTAGCCGCGCCGATGTACGGAGGCGCCAACTGCCCCAACCTCACCCAAACAAGGACTTGTGCGAACCTTTTGCCCTGTCCGGTTGGGGAAAGCGAGCATCACTACAGCCTTAAAGTCGGCCCCTGGAGCGAGTGCAGGCAGCCGCAACACAAAGGACTCTGGATGAGCGGAAGGACCATGTTGGACTTCACCACAGGAGATACGGAGAGGAACACAGTCAAACGACACATCCAGAGCTCCCAGCACCACCATCACCacctccaccaccaccaccacagcCTCAAGGGCTTGGACGTGGAGATCGGCTACCAGACACGCCAAGTTCGTTGCGTGCGAAGTGACGGCAAGAACGCCATGCTGAGGTATGTGTGGAAGAGCACAGATTGGGGGGACTGTCAAGTAGCCCCTCTTCTCAGCCAGCAGGACAGACGGCTTAACAATGTAAGCGTTCTCTGCGGTGGAGGGATTCAGACAAGGCAGCTGTACTGCGTCCAGGTCCCAGACAACTCCACCCCTCATCACAGAAAAGAAGTGTCCAGGCCGGTAAGTGGTCGTCTGTGTACAGGAGATTTGCCATCCGCAGTGCAGCCCTGCTCCATACCATGCCCACAGCCGTGCCTGCTCTCATCCTGGTCCTCTTGGGGTGCCTGTCTCCACGACAACTGCATGGAAACACATGGTCGAAAAGGCTACAGGCAGAGGAGAAGAGAGGTGCTGGAGGAAGGATCAGAAACAGAAAGCTGTGCCCATCTCCTGGAGTCAATGCCCTGTGAGGATCCAGTGTGCTTCCTGTGGCAGGTGCAGTCTGAGGGCGCTTGTGTGCCCACCGAAGGGAACTGTGGAAATGGAACCAGGACTCAAACTGTGGCTTGCCTCAACTCACAAGGGCAGCTTGTTCCTGAGGAGCTCTGTGAAGATGAGCCGCCCCCTAAAGAGGTGTCCTGTGTGATGGCGTGCTCAGGCGACTGTGTTCTCAGCTCATGGTCTGATTGGTCGTCCTGCTCCCACAGCTGCTCCAGTAAAAACTCAGAGGGCAGACAAAGCCGCACACGGACCATATTAGGCTTACCGGGAGAAGCTAAGGCATGTCCAGCTGCTCCTGCTCTAGAAGAGTGGAGAACTTGTAATGATCATCCATGCATCACTTTCTACTGGGAAGCGTCGCCATGGGGACCATGCATTGAGGACTTCTCCATGAATCTAAATGGCACTGGCTACTGGAACGGAACGGCCACCTGCGCAGTCGGGGTGCAGATTCGTAAAGTGGTCTGCATGAAAATGGGCGTCGGGCCAGTTATTCCCAAAAGgTGTCCAGAATCTGCCCGACCAGACACTGGTCAACCCTGTTTACTGCCCTGTAAGAAAGATTGCATTGTGACTCCTTTCAGTGAATGGACAGCCTGCCCCACCACATGCCTGCCAGTGAACAGCAGCGTGCCCTCGCAGTCACGATACAGGATCATCATCCAGCGGGCGGCCAATGGGGGTCAAGAGTGTCCAGATACTTTATATGAGGAGAGAGAATGCGAGGCTCTTCTGGTTTGTCCTATTTACAGATGGAAGACACACAGATGGCATCCGTGTACTCTGGTCCCAGATTCTGTCCAGCAGGGAATGACGGGAGCCAGTGAATCGTGTGGTAAAGGATTAGAGATGAGAGGAGTGAGCTGTGTGGACGAGTATGACGAGATGGCAGCTGTGTCAGAGTGTCTCCGGTGGGCCGGGCCGATGCCGTCACGCTTCAGGAGCTGCTGGGTGCCGTGCAGGGATGACTGCACTTTCAGTTCCTGGTCGAAATTCTCTGAATGCTCTGGCTGCGGGAGCCGGCGTACTCGCAAACGCACGCTAACAGGTCGGAGCCGGAAGCAAGACCGCTGTCAACGAGAAGCCCTTTACCCTCTGGTGGAAACTGAGCTCTGTCCCTGTGAGGAGTTTGTTTCTCAGCCATATGGTAATTGGTCATCTTGTATCCTATCGGAGAACTCGGCACTAGGATCTCTCCATGGATGGAGGGGTCGGCGAGAGGTGCGCGACTGCGGTCACGGTTTGCGTTATCGCGCTGTGGCCTGTCTGGACCACGAAGCCCACCTGGTTGGCCCAGACCTCTGCAGTGAATCAGGTCTGGTGGAAGAGGTCTGCCACATACCCTGCCCTCTGGACTGCAAGCTGAGCGACTGGTCACCGTGGTCGGTCTGCAGCGCCTCCTGTGGCAGCGGGCTGAAAATCAGGTCCAAATGGCTACGGGAGAAGCCGTTCAACGGTGGGCGGCCATGCCCCAAACTAGACCTGAAGAATCAGGCTCAGgtGTACGAGGCAGTGCCCTGTCGCAGTGAGTGCGGTCAGTACGAGTGGGTAACAGACCCCTGGTCAGTCTGCACCATCAACACAGTGGACGAGCTGCCAGCCTGTGGTGAGGGTGTCCAAAGCCGCAAGATTCGGTGTGTGAGGCGCGGAAGCCAGGATCTGGTTAGCGGTGTGAATGAGACCCTCTGTGACCAGGATGAAATCCCTCCCCAAGCTCAGACCTGCGTCCTGCCGTGCCCTAATGACTGCGTGAAGTCTCAGTGGAGTCAATGGAGCACCTGTTCAATAcCGTGTAATGAAAGCACAGTGAGGATGAGGACGAGACACGTGCTGCGCCCCCCGGTGGCCGACAGAGTGTGTCCGGACAGCAACCAGACAGAGCCCTGCAGCCTCAACAGCACCTGCTTCAATTATAACTACAATGTCTCCAACTGGAGCACCTGTCAGCTGAGCGAACATGCCATCTGCGGCCAGGGCACGAGGACGCGACTCTTAGATTGCATCCGCAGCGATGGCAAAGTGGTGGATTTGAGCGTGTGCGAGGAGCTGGGCCTGTCTCAACCGTGGAGACTGGCCATGGACTGTGTggtggactgtccctttaactgCATCCTGTCTGACTGGGCGCCCTGGACCGAGTGTTCACACACCTGTGGCAGTAAAGGTGTTATGACTCGCTCTCGCAGCGTGCTTCAGCAAGCTCATGAGGAGGGACGCCCCTGCGCCTCTCAGCTCTCCCAGACTAAACCCTGTCCCATCAGCCCCTGCTACACGTGGCTTCTGAGCGACTGGTCTCCCTGCAAAGTGGAGGGGGCAGAATGTGGAGAGGGCACGAGGGAGAGGAACCTGACGTGTGTGGTGCACTGGTCAGACTGGCCAGACAGCCCCTACCCTTCGAAAACGGTTGAGGACGAGAATTGTGGAGACCGCGTGAGAAAGGAGAGCGAGCAGGAACTTCAGCAGCCGTGTTTCGTCCCCTGCCCAGGGGACTGTCACCTCACAGAGTGGTCGCAGTGGAGTTCCTGTCAGCTGACGTGTCTGGAAGGACGTAGTTTTGAGACAGTGGGCCGCCAGGCACGTTCACAGGCTGTGGTCATACAAGTGCTGGAGAATCAGGACAGCTGCCCTCACCAAGTCTTTGAGACACGTCCATGTAAAGGAGGGAAATGTCACAGTTACGAGTGGAGGACCAGTGCCTGGAATGACAACGAAAGATCAGTGTGGTGCCAGCGGTCTGATGGGGTCAATGTGACAGGGGGCTGCTTTCCACAGAGTCGGCCGACCACTGTGCGCCACTGCCATCCTCCCTGCACCAAACCCTTCTCCCACTGCAAGCAGAGCGGTGTTTGCGGCTGTGAGAAGGGCTACACCGAAGTGATGACCACACACGGATTCCTGGATTACTGCACCAAGACCCCAGGTGCTGACAACAAAAAGGCAGATGTGAAGACCAGCTCGGGAAGATTAAAACCAGGCACCACTCAGATCCAGGACTTCTTCGGCGAGTGGTCCCTGCAGCCGCTCGGCCCAGATGGAAGAATAAAGCTGTGGGTCTATGGGTTAACAGCCGGAGGATTCGTTCTAATATTACTCATAATCGCTGTGGCCTTTCTGTTTTGCAAACCGTCCAAACAGAGCAAAAGTGCATCTCCACCACAGAAGCCGTTGACTCTGGCCTATGACGGGGATGTGGACATGTGATCAAGCTCTCTGTGACTGTACATTCAAAGCACAAGCTGGACTACGtgcaacattttaatatgttcatCTCTCCAAGGCACACTTGGGattctgggaaaaaaagaaaagaaaagacagtAATAAAGGAGTAACAGACAGGCATCGGAGAACAATTTGATCTTGAAATCTGCAGCATACACGAAACGTTGTGTGCACAACAGCAAGGACAAAGGTTTTGGATCAGCGGTCGTGAAAACCGTGACATTTAAAGAGGGTACGAGACACAGCTGACATTCCATAGACCAGATGGAGGACTTTGACATTTTCTTGCCGTGATTTTTCttatatcagaaaaaaaaaatacacaagttCAAGTTGTGCCGACTCTATTGTATCAGTCGCGTTAAAAGcctggttcacccaaaaatgtaaaccgtgtcattatttactcactctcaaacctgtatgactggATCACGACCAGACAATGAGATCATTGAGTCCAATTAGTGAATAAATCATTCAGAACAGCTTGAACTGAATCAGTCAGATGACTCAAAATAACAATACGTCAGGATTTTTAGTGAAAAAATGACTTCAGTCGAAGTTTGATTGTCTCACAAAgctataatatgaataaaaagtctTGATACATAATGCACAGGttgtatgcattatattattccAGAATTATAATACTTTCTTTATGCTTTTGCATCCTCCAGCCGCCGTTCATAACTGCATTGGCAAAACAACTAGCACATTATTAAGATATATCCTCTTAGAcgaaagaaagtcacacaggtttgcaGCGACTTGAGTGtgattaaatgacagaattttcatttttgcgtgaactatccctttaaggcgATCTGAAAGTGACTTTTTAACAGAGAACAAGAAAAGACTGATGCGTTATGCACTATATTAGTGCTTAGTCATTCTTTAGTTCCCTTCTTGATTTATGTTCAAACAGAttttctagtgttttttttcattgtgatgCAAGGACTTTGCTGTAAACTGTTGTTTTCGTGTGGAATGTCTCCGAACGCGTGTGTGATCCTCACAGTAAACCGAAACACAGCTCATTTAGACGCTGCGAGAGGTTAAGGTGATGATCTGCCCGTGTGCTGCTTCCACACGCCTCAGTTTGTCCTTTAACCTCCGTCTAGCGGCTGAAAAATTGATGAGGTCTGCTCCAACGCCAGCAGATAATGAACTGTGTTCCTGTGATGCACAGAAGGGTTTTTGAAAGCGGCTTCCTGCAATATCCTGCGGTTAGAGGAACTCATTTAGCACAGATACAGTGGACCAATGCGTTTGTGTAGAGTCTGCATGAGCATAACACCGTGAGAGGTGCTTCAAAACTATGAATGTTCATCATTTTCAATAAAGTACAGGTGCTGgttctgtattttaataataacccTGCTAGTCCTTTTTTGGCTTTATTGACTGACTTCTTGCTGGTATAATTGTATCTGTTTCAAGATCTACAGTGTCAAGGTTCGCTTCGCTCCTTGTACTGCCACGTGACGAAACTTTTCCTAAATCTCAACGGTCCTCATTATAATAAGATAACTTGTGGTTTCTAAGCTACGCGAGACCTCCGGTTCACGGGATCTTGCTCCACCGAAAGAATGTATTCTGTATGttgcatacatgcatatgtattttatttttttctttcagttttagaGTTTGTCCTTTTTGTCCCATCGGTGTTTCTGCTGCCGTCTGTGTTGGCTGGTAAGTCTGCATCGAGAACAGAACAGTTCCTCTTTGTTTGAAACCCATTCGGATGATCTGCTGCTCTTAgactgatttcatcaaaaggCTTTGGCGTTTTTTCTAAATTAGTCCACTGATGTGAAAAGCTAAAATGTGTATAGcttataatagttttatttatttatttattttttcaggagcaaaccctggaaaaaactgcaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgaagcCCAACTGTGCGTGTGCATGCTGGATTGATTTTGTCATACACTGGATTATTCCAAAAGTGGCCTTGCATTTTTATGGAAATTTGCTCCTATAGTGACAAAGTCAACAGTGTGTTTTGTTCGTTTGATTTCCTTGGTTTTTCTTTGTTGCCCCTTAGAACTGACTTGTTTACAtggcttcttcttcttctaaaatGTTCAGTATGCTCTCAGCACTATATACGGTTGCCTGTAAAACACTGACCTTTAGTTTACATAGTactttctgttttaattgtgtGTACTTGAAGATTTGAACGAAATTGCTAATAAATTGTGATACTCTGTGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101881 lncRNA upstream 30390 9255332 ~ 9412735 (+) True G68901
TU101878 lncRNA upstream 201738 9240938 ~ 9241387 (+) True G68900
TU101875 lncRNA upstream 248822 9180904 ~ 9194303 (+) True G68897
TU101872 lncRNA upstream 258557 9180751 ~ 9184568 (+) True G68896
TU101871 lncRNA upstream 264199 9176324 ~ 9178926 (+) True G68895
TU101892 lncRNA downstream 8424 9575421 ~ 9575654 (+) True G68908
TU102047 lncRNA downstream 323654 9890651 ~ 9891580 (+) True G69003
TU102091 lncRNA downstream 488499 10055496 ~ 10056501 (+) True G69028
TU102094 lncRNA downstream 494061 10061058 ~ 10061611 (+) True G69031
TU102095 lncRNA downstream 494688 10061685 ~ 10061887 (+) True G69032
XM_043249170.1 mRNA upstream 283140 9156051 ~ 9159985 (+) False LOC122351827
XM_043249171.1 mRNA upstream 283366 9156045 ~ 9159759 (+) False LOC122351827
XM_043249573.1 mRNA upstream 293032 9142592 ~ 9150093 (+) True si:ch1073-416j23.1
XM_043249574.1 mRNA upstream 293032 9142592 ~ 9150093 (+) False si:ch1073-416j23.1
XM_043249163.1 mRNA upstream 466126 8966861 ~ 8976999 (+) True chpfa
XM_043248061.1 mRNA downstream 3403 9570400 ~ 9574754 (+) True hnmt
XM_043248969.1 mRNA downstream 34989 9601986 ~ 9610746 (+) True spopla
XM_043248971.1 mRNA downstream 34989 9601986 ~ 9610746 (+) False spopla
XM_043248970.1 mRNA downstream 34989 9601986 ~ 9610746 (+) False spopla
XM_043249259.1 mRNA downstream 61617 9628614 ~ 9652625 (+) False LOC122351877
XR_006251841.1 other upstream 293459 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 293464 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 577228 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 1009642 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 1100446 8341298 ~ 8342679 (+) False si:ch211-167j6.3
XR_006251850.1 other downstream 761734 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 1916440 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 2479502 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 3060538 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 3163839 12730836 ~ 12730962 (+) True LOC122352187

Expression Profile