RNA id: XM_043249661.1


Basic Information

Item Value
RNA id XM_043249661.1
length 9492
RNA type mRNA
GC content 0.48
exon number 47
gene id usp9
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16152577 ~ 16180163 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCATTTACTTCCATCCATAGCACGGTGACGGGTCTCTAAGCAGCCTGacacaggagagagagagagcggctGGAGGCAGTTTAAGGGAGGGGGGCAGCAGCAGTCGATGCTGGTGACGCAGGAAAAACACCCAACAGCAGACAATAAACCAATGATCTGATCTCAACACAGGCGTGTTATTTATAATCGAGACAGCCAAGCACATGCACGCGGCTGAGTAATTATAAAACAGCACTTAAATGATCCGATCTGGGGTCGTATGGAGGAAAGATCCAGTTTGATTCTCGgttATGCAATGGTCTCTGCAACATATCCAGTCCCCCAGGTGGTGCTTTCACTTTCAGAAGTGTGCCGGTTCTCCGTCGCTCCTAAGGAGAAACTGATTTCTTCTGGTGTGCCAGCAACATAAGCAGACAAGATTGCAAAGATCTGCCCCGTGTCGAGTATGACGGCCACGACCCGTGGCTCCCCTGTGGGAGGGAATGACGGTCAGGGCCAGGCTCCGGATGGCCAGTCCCAGCCACCCCTGCCCCAGAACCAGACGTCCTCTCCCAACTCATCCAATGAAAACTCCCCAGTGAGCCCACCAGATGACCAGGGTCAGGGGGACAGTCCCGCTCCtttggaggaggaggagccagcTTTCCCCCACACTGAACTGGCCAAGCTGGATGACATGATCAACAGACCTCGCTGGGTCGTTCCAGTTTTGCCAAAGGGTGAATTAGAAGTTCTTCTTGAAGCTGCTATAGATCTTTGTAAAAAAGGACTTGATGTCAAGTGTGAAGCATGCCAGAGGTTTTTCAGAGATGGCTTGACAATATCCTTTACGAAAATACTGACAGATGAGGCTGTTAGTGGATGGAAATTTGAGATCCATCGGTGCATCATTAATAACGCCCACCGACTGGTGGAGCTGTGTGTGACCAAGCTCTCTCAGGACTGGTTCCCTCTACTAGAACTCTTGGCAATGGCCACCAACCCCCACTGTAAGTTCCACATCTACAATGGTACTCGGCCCTCTGAGACGGTGCCTGCTGGGGTTCAGCTAGCTGAGGATGAGCTTTTTGCCCGTCCACCTGACCCTCGCTCTCCTAAGGGCTGGTTGGTGGacttaataaacaaatttgGCACGTTAAACGGGTTTCAAATTCTGCACGATCGATTCATGAGCAGCCAAGCTCTGAATGTTCAGATCATCGCTGCACTCATTAAGCCTTTTGGACAGTGCTATGAGTTTCTCACTTTGCAAACGGTGAAGAAGTACTTTCTTCCTATCATAGAAATGGTTCCTCAGTTTCTAGAAAACCTCACTGATGAGGAATTGAAAAAGGAAGCAAAGAACGAAGCCAAAAACGATGCCCTGTCTATGATAATCAAATCTTTGAAGAACCTGGCTTCTCGAGTACCAGGACAAGAGGAAACAGTGAAGAATTTAGAGATATTTAGGTTAAAAATGATTCTTAGATTATTGCAGATTTCTTcttttaatggcaaaatgaatgcACTAAATGAAGTAAACAAGGTGATTTCAAGTGTTTCCTACTACACGCATCGTCATGGCAATCCTGAGGAGGAAGAGTGGCTGACGGCAGAACGCATGGCAGAATGGATTcagcaaaacaatattttgtctATTGTGCTGCGAGACAGCCTTCATCAGCCACAGTATGTGGAGAAACTGGAGAAGATCCTGCGATTTGTCATCAAAGAAAAGGCCTTAACGCTTCAGGACCTGGACAACATCTGGGCAGCTCAGGCTGGGAAACATGAGGCTATTGTCAAGAATGTTCACGATCTCCTTGCGAAGCTGGCGTGGGATTTCTCACCCGAACAGCTGGACCATCTCTTTGACTGCTTCAAGGAGAGCTGGACTAATGCAAGTAAAAAGCAGAGGGAAAAGTTACTGGAATTGATTCGTCGACTGGCAGAGGATGACAAGGATGGTGTGATGGCTCACAAAGTGCTCAATCTGCTGTGGAATTTGGCCCATAGTGATGATGTTCCTGTGGATATCATGGACCAGGCCCTTAGTGCTCATATCAAAATTTTGGACTATAGCTGCTCTCAGGACAGGGACACACAAAAGATGCAGTGGATAGACCGATTCATAGAAGAATTAAGAACTAATGACAAATGGGTGATTCCTGCACTGAAGCAAATACGGGAGATCTGTAGCCTCTTTGGAGAAGCCCCCCAGAATTTAAGaaagaaaataCCTATTAACTTACTAAAGAGCTTAGATGGTCAAACGCAGCGCAGCCCACATGTCTTCTATCGACATGACCTAATCAACCAACTGCAGCACAACCATGCACTGGTCACTCTTGTAGCAGAGAACCTGTCTGCATATATGGAGAATATGAGGCAGTTCTCAAAAGAGCACACAGACTTTGATCCCCAGACGGTAAGGCCAGGAAGTCGGTATAGTCATGTTCAGGAGGTCCAGGAGCGGCTTAATTTCTTGAGGTTCTTACTGAAAGATGGGCAACTCTGGCTGTGCGCACCTCAGGCTAAGCAGATCTGGAAGTGCCTGGCGGAGAACGCAGTGTTCTTGTGTGATCGGGAGGCCTGCTTCAAATGGTACTCCAAACTCATGGGGGACGAACCCGACCTTGACCCTGACATTAACAAGGACTTTTTTGAGAACAATGTACTGCAGCTTGACCCCTCACTGCTGACAGAGAATGGGATGAAATGCTTTGAACGATTCTTCAAGGCTGTCAACTGCAGGGAGGGCAAACTGGTGGCAAAACGCCGGGCATATATGATGGACGACTTGGAGCTGATAGGGCTGGATTACCTGTGGAGGGTTGTGATTCAAGGAAGTGATGATATTGCTAGCCGAGCAATTGACTTGCTTAAAGAGATTTATACAAACCTTGGACCAAAATTACAAGCCAATCAGGTAGAGATACATGaggattttattcagtcttGCTTTGACCGGCTCAAAGCCTCCTATGACACTCTGTGTGTGCTGGACGGAGATAAAGACAGCATTAACTGTGCCAGACAGGAGGCCATCCGCATGGTGAGGGTACTGACTGTGCTCAGGGAGTATATAACAGAGTGTGACAGTGACTACCATGAGGAGAGGACCATCCTGCCCATGTCCAGggCTTTCAGAGGAAAGCATATCACGCTAGTTGTGCGTTTCCCAAACCAAGGCCGACAGGTTGATGATCTGGATATTTGGTCGCATACCAATGACACAATTGGTTCGGTGCGACGCTGCATTCTGAATCGAATAAAGGCCAACAGCACACACACCAAGATTGAGCTGTTTATTGGGGGAGAGATCATAGACCCAGCAGATGACAGAAAGCTAATCGGGCAGCTAAACCTCAAAGATAAAACTCTCATCACAGCCAAGCTCACCCAGGTCAGCGCCAATATGCCTTCCAGTCCAGACAGCTCCTCAGACTCCTCCACTGGCTCCCCTGGGAACCATGGTAATCACTACAGTGATGGGCCAAACCCTGAAGTGGAGAGCTGTCTTCCTGGCGTGATCATGTCCCTGCACCTGCGCTACATCTCTTTCCTCTGGCAAGTTGCAGACTTGGGCTGTAATCTCAACATGCCTCTCCTGCGGGATGGTGCTCGTGTTCTAATGAAGCTCATGCCTCCAGATAACACCACAGTGGAAAACCTGCGAGCCATCTGTCTGGATCACGCCAAACTCGGCGAAAACAGCCTTAGCCCCACATTGGATTCACGTTTCTTTGGACCATCACCATCTCAAGTGCTTTACTTGATAGAGGTGGTGTACGCCTTGCTTATGCCCGCCAGTGGGACATTGGGTGAGGATGCGAGTGACTTCCAGTACAACTTCTTGAAGAGTGGTGGCCTGCCCCTGGTTTTGAGCATGCTCACCAGAAATAACTTCCTGCCAAATGCTGACATGGAGACCCGGCGGGGAGCTTATCTCAACGCACTAAAAATAGCCAAACTGCTGCTCACAGCTGTAGGCTTTGGCCATGTGAAGGCTGTGGCGGAGGCCTGCCAGCCTGTGGTGGAGGGGACTATCCCTGTGTCTCCTATCAACCAGACCACACATGACCAGGCTCTAGTGCTACAGAACGCCTTGCAGAATATCCCCAACCCCTCCGCTGAGTGTATGCTGCGGAACGTGGCCATCCGCCTCGCCCAACAGATCTCAGATGAGAACTTCTTCCAGGCCTCCAAGTACATCCCAGATATCTGTGTCATTCGAGCGGTTCAGAAGATAGTCTGGGCTTCTGGCTGTGGCTCTGTTCAGCATGTCTTCAGCTCTAATGAGGAGATTAGCAAGATCTACGAGAAGACTAATGCTGGCAATGAGCCAGATGCAGAAGATGAGCAGGTGTGCTGTGAAGCTCTGGAGGTCATGACCCTGTGTTTCGCCCTTATGCCCACTGCACTAGATGCACTTAGCAAAGAAAAGGCCTGGCAGACCTTCATTATAGATCTGCTGCTGCACTGCCAGAGCAAGTCTGTTCGGCAAATGGCCCAAGAACAGTTCTTCCTCATGGCCACCCGGTGTTGTATGGGCCATAGGcctctcctcttcttcatcacCCTTCTCTTTACAGTTTTAGGTAGCACTGCAAAAGAGCGGGCAAAGCACGCTGCTGATTACTTCACTCTTCTAAGGCACTTACTCAACTATGCATATAACAGCAACATTAATCTTCCTAATGCAGAAGTTCTCTTAAACAATGAGATCGACTGGTTAAAGCGCATCCGGGATGAAGTGAAGAGGACTGGAGAGCCTGGGGTTGAGGAGACCATATTGGAAGGTCATATTGGTGTCACAAAAGAGCTACTAGCTTTCCAGACCCCAGAGAAAAAATTCCACATTGGCTGTGAAAAAGGAGGTGCTAGTCTTATCAAGGAGTTAATGGATGACTTCCTGTTTCCAGCATCTAATGTGTACTTGCAATACATGAAGAGTGGAGAATTCCCCACTGAGCAGGCCATACCTGTGTGTAGCACCCCAGCCACGATCAATGCCGGCTTTGAACTGCTGGTTGCACTTGCTGTCGGATGTGTGCGAAATCTCAAGCAGATTGTGGACACACTAACTGACATGTACTATTTAGgtTGTGAACCACTTACAGAATGGGAATATTTGCCGCCAGTTGGCCCAAGGCCTACTAAGGGGTTTGTGGGTCTGAAAAATGCAGGTGCGACTTGCTACATGAACTCAGTGATCCAGCAGCTTTACATGATTCCTCCCATTAGGAATGGCATCCTGGCCATTGAAGGCACAGGCAGCGATGTGGATGATGATATGTCTGGAGATGAGAAGCAAGATAATGAGAGTAATGTGGATCCCCGGGATGAGGTGTTTGGCTATCAGCACCAGTTTGAAGACAAACCCTCTCTCAGTAAGTCGGAAGACAGGAAGGAATACAACATTGGGGTTCTTCGGCAGTTGCAGGTCATTTTTGGACACTTGGCTGCCTCCAGGTTGCAATACTATGTGCCTAGGGGATTCTGGAAGCAATTTCGGTTGTGGGGTGAACCGGTCAATCTGAGAGAGCAGCATGATGCCCTGGAGTTCTTTAACTCGCTGGTAGACAGTTTAGACGAAGCTTTGAAAGCATTGGGTCACCCTGCCATGCTGAGCAAAGTACTCGGTGGCTCTTTTGCAGACCAGAAAATATGCCAGGGTTGTCCTCACAGATATGAATGTGAGGAATCGTTTACGACGCTGAATGTAGATATCAGAAACCATCAAAATCTCCTTGATTCCATGGAGCAGTATGTGAAAGGAGACTTGCTCGAGGGTGCAAATGCCTACCACTgtgaaaaatgcaacaaaaagGTGGACACAGTGAAGCGTTTACTCATTAAGAAGCTTCCTCCGGTGCTGGCCATCCAGCTGAAACGCTTCGATTATGACTGGGAACGAGAGTGTGCCATCAAGTTCAATGATTACTTTGAGTTCCCACGGGAGTTAGACATGGAACCCTATACAGTGGCTGGAGTAGCCAAGCTGGAGGGGTCTGATGTACACCCAGAGAACCAGCAGCAGGTGGTCCAGCAGAATGAGCCGTCAGAGCCAGAACCCCCCAGCAGCTCTCGTTATCGTTTGGTGGGAGTGCTGGTCCACTCAGGCCAGGCTAGTGGAGGTCATTATTACTCCTACATCATTCAGAGGAACGGCAGTGGTGGTGAGGGAGAAAGGAACCGTTGGTATAAATTTGATGATGGAGACGTCACTGAGTGCAAGATGGACGATGACGAGGAGATGAAGAACCAGTGCTTTGGTGGAGAGTACATGGGTGAGGTCTTCGACCATATGATGAAACGCATGTCCTACAGGCGACAGAAGCGCTGGTGGAATGCCTACATCCTCTTTTATGAGCGTATAGACACGTTAGATAAGGACAGCGAGCTGGTTAAATACATCACTGAGCTCACAGTGACTAGCAAACCTCACCAGGTGAAGATGCCCTCTGTAATTGAACGCAGCGTGCGCaaacaaaatgtgcagtttATGCACAACCGTATGCAGTACAGCTTGGAGTACTTCCAGTTCATCAGGAAACTGCTGACCTGTAACAGTGTCTACTTGAACTCACCTCCAGGTCAAGACCATCTTTTGCCAGAAGCAGAAGAAATGGCTATGATTAGTATACAGCTTGCTGCTAGATTTCTCTTCAGTACTGGATTCCACACCAAGAAAATTGTCCGCGGCCCTGCTAGTGATTGGTATGATGCTCTGTGCATCTTGCTACGGCACAGTAAAAATGTGCGTTACTGGTTTGCACACAATGTCCTCTTTGCATATCCAAACCGCTTCTCCGAGTACCTGCTTGAGTGTCCCAGTGCAGAGGTTCGAGGGGCCTTCTCCAAACTCATTGTATTCATTGCACATTTCTCCCTGCAAGATGGACCTTGCCCTTCACCCATTGCGTCACCTGGACCTTCAAGTCAGAGCTGTGATAATTTGAGTTTAAGTGAGCACTTGTTCCGTGCTGTACTTAACCTGCTGAGAAGGGAAGTATCTGAGCACGGCCGTCACTTGCAGCAGTACTTCAACCTCTTCGTCATGTATGCCAACCTTGgcTTGGCAGAGAAGACACAGCTATTGAAGCTTGGGGTACCAGCTACCTTCATGCTTGTGGCTCTAGATGAGGGCCCTGGCCCTCCCATTAAGTACCAGTATGCTGAGCTTGGAAAGCTCTATACTGTCGTCTCACAGCTGGTTCGCTGCTGTGATGTGACCTCACGTATGCAGTCCTCGATCAATGGTAACCCTCCCCTGCCGAATCCATATGGTGACCCCAACATCACCGCTCCCATCATGCCTCTGCAGCAGCTGGTGGTGGACATCCTGTTTGTGCGCACCAGTTATGTAAAGAAGATTATCGAGGACTGCAGTAACTCTGAGGACACTATCAAACTGCTGAGATTCTGCTGTTGGGAAAACCCTCAGTTTTCCTCAACTGTGCTGAGTGAACTACTGTGGCAGGTGGCATATTCATACACGTATGAGTTAAGGCCTTACCTGGACCTGCTCCTTCAAATCTTGTTTATTGAGGATTCATGGCAGACTCACAGGATCCACAATGTGCTGAAGGGAATCCCTGATGACCGTGATGGACTTTTTGACACCATTCAGCGCTCCAAAAATCACTACCAAAAGAGAGCTTATCAGTGTATCAAGTGCATGGTGGCTCTTTTCAGCAACTGTTCAGTGGCCTACCAAATTCTTCAGAGTAATGGAGATTTAAAAAGGAAGTGGACCTGGGCAGTGGAATGGCTTGGTGATGAGCTGGAAAGGAGGCCGTACACTGGCAATACCCAGTACACGTATAACAACTGGTCCCCTCCTGTCCAGAGCAATGAGACTTCTAATGGATACTTCCTGGAGCGGTCCCATAGTGCCCGAATGACTTTAGCCAAGGCCTGTGAGTTGTGTCCAGAAGAGGAGCCTGATGAGCAGGAGGCCCTTGATGAGCAGGACACTTCTCCTCCAGAGGACACTGCTCTGTACCCTCACTCTCCAGGCACAAAGTTTCAACAGAATAACCTTCCGCATACACAGCCGTACACTGGCCCCGCAGCACAGCACGTCAACAACCCTCAGCGTCCAGGCCCACGAGCACAAGAGAACTGGGAGCCCCCCGAGGAGGTGCCGCCCAGCCAGACTAAAGACTAACGATATGTTGTCACACTGTCCTCCATCTGAGTTCTCCAGCGAGATACTCGAATCCAGAGCAAGGCCAGGCCCCACCATGCTGCTCTACTCCAGAGCCCGTGTAACCAGAACATTCAGCTTCCCTCAATTTCTAACCCTGGAGTGGAGAGTCTCTTCACCGTCTGCTCTGCAGTATTAACTGTCAAAAGTGTAACTTGCAGTGGACTGTGCATAttgtttgtaataataaaacggGCCTGTCGCACTTGTCTCATGACAGAGGTGTACATACTATGTTAATGTTTTGACTGTTCAAAAGCAACAGCATGTGTGATGCTGTTGGGAGACTGCAAAtttatgaaaatagaaaaacaacaaaaaaaaaaaagaagcaaatacaacagtgaaagacaaaaaaaaaatatccctgTTTTATCCCATGCTCAGTAGTAAGGTTTGGGCCGTTTGGGTCATTCTGCTTTTGATCATACATTATATTCATGTCAAAGCTTAACCGGCTATGGCACCTCGTGAGCAAGAGTTGGCCATAGTTTGTGAACGATGGGACGGTTGGGTTATGATCTTGACATTTAGTTGATGTGAATGGGGTGATGCAACTTTATTCTGGAAATTcctattgcctttttttttctttctttttttttttttttttttttttttctggtaataattcaataatttgaAAGCTCCAGCTGACACGCTGTAACATCTTAGCATGGCTTCACATCAAACTAGTATAGCCGAAGGGCGATTCTGCTGTTTTCTTTCACCATGGCGATTTTGGAAGAGCCCTTTTGTTGGTCCCCTCCTCCATATGCTCTTCTAGATTTGATGTTTTCGAAGCAATGTAAGAAGTGGCTTTACAATTGCACACGTTTCCTCTGATAAATATTTGGCTGTCGCTTTTTTTGGTGGGATAAACGCTTAGTTTTGAGGATAGGAATTttagaaagagaaaatatatgCAACAGTTTATGCCAGGATGCCTGGAACATTAGTGGACAGAACTCGTTTTGCTTATTTGTCTTGACCTTTGCGTCAGACAGATGACCTCCTGGCAGTTTAGTGGGTCGCCTGACTTCGCCTGATCCCTGTTCGCATTCGTGTATTCGAAAAGAGCCTCGGTTTTAGGGATTCTTCATTTAAGGAGAGTGAACGTTAAAAGCAGGGTTGTACCATAAAATAACTGCTGGTTAGTCATGTTGCAACTTCAGTTAGTAAAGTCTCTCGGATTAAAGGAGTAAACATCAGTagatactgtatgtatttaattggtaacttgaatgctttttttttttttttttttttttttttttttttttttcttggattttgt

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251858.1 lncRNA upstream 120409 16030874 ~ 16032168 (+) True LOC122352145
TU104581 lncRNA upstream 140423 15974481 ~ 16012154 (+) True G70700
TU104601 lncRNA upstream 187913 15963820 ~ 15964664 (+) True G70715
TU104562 lncRNA upstream 250883 15899451 ~ 15901694 (+) True rabl3
TU104438 lncRNA upstream 460390 15689198 ~ 15692187 (+) True G70603
TU104648 lncRNA downstream 2205 16182368 ~ 16183683 (+) False G70743
TU104658 lncRNA downstream 23629 16203792 ~ 16205690 (+) True G70746
TU104666 lncRNA downstream 26157 16206320 ~ 16206691 (+) True G70753
TU104659 lncRNA downstream 27942 16208105 ~ 16210772 (+) True G70747
TU104660 lncRNA downstream 33009 16213172 ~ 16215227 (+) True G70748
XM_043248766.1 mRNA upstream 7970 16122028 ~ 16144607 (+) True dop1b
XM_043248214.1 mRNA downstream 5364 16185527 ~ 16197489 (+) False ddx3xa
XM_043248216.1 mRNA downstream 5365 16185528 ~ 16197489 (+) False ddx3xa
XM_043248218.1 mRNA downstream 5365 16185528 ~ 16197489 (+) False ddx3xa
XM_043248225.1 mRNA downstream 5365 16185528 ~ 16197489 (+) False ddx3xa
XM_043248220.1 mRNA downstream 5366 16185529 ~ 16197489 (+) False ddx3xa
TU104501 other upstream 406471 15734592 ~ 15746106 (+) False plcl1
TU104429 other upstream 441400 15708236 ~ 15711177 (+) False LOC122351678
XR_006251807.1 other upstream 727538 15401128 ~ 15425039 (+) False si:ch211-168k14.2
XR_006251758.1 other upstream 2470586 13676163 ~ 13681991 (+) False ccnt2a
unassigned_transcript_1467 other upstream 2728751 13423714 ~ 13423826 (+) True trnal-caa
TU104743 other downstream 548344 16728507 ~ 16731361 (+) True G70814
TU104753 other downstream 565736 16745899 ~ 16749695 (+) False mpc2b
TU105078 other downstream 736598 16916761 ~ 16919290 (+) True si:ch211-218d20.15
TU105185 other downstream 1023634 17203797 ~ 17206505 (+) False jam2b
TU105274 other downstream 1158964 17339127 ~ 17339622 (+) True G71130