RNA id: XM_043249674.1


Basic Information

Item Value
RNA id XM_043249674.1
length 1926
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC122352131
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7347110 ~ 7349416 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTCTCCGATTACAAAGAACACTGTTACCGCATGATGCTCCAGGTATAAATATGTTCTGTGTCAGATTTTGACACATTTAGAGCTTCATTCCGAACCCTGAGCATCGGCTGGAAGACAAAATCCAATATGCGTGAGTGCATTTCCGTTCATGTTGGCCAAGCTGGAGCACAGATTGGTAATGCATGCTGGGAGCTTTACTGTCTGGAGCACGGTATTCAGCCGGATGGACAGATGCCCAGTGATAAGACAATAGGAGGAGGAGATGATTCCTTCAACACCTTCTTCAGCGAGACGGCTTCAGGAAAACATGTTCCACGTGCCATCTTTGTTGATCTGGAACCCACTGTGATTGATGAAGTACGCACGGGCACCTACCGCCAACTCTTTCACCCAGAACAACTCATCACTGGAAAAGAGGACGCTGCCAATAACTATGCCAGGGGACACTACACCATTGGCAAGGAGATCATTGATTCAGTCCTGGATCGTATCCGCAAACTGGCTGATCAGTGCACTGGCCTCCAGGGTTTCCTGGTGTTCCACAGCTTTGGTGGAGGTACTGGCTCTGGCTTCACCTCCCTGCTGATGGAGCGTCTCTCCGTCGACTATGGCAAGAAGTCCAAACTGGAGTTTGCCATCTATCCTGCTCCTCAAGTGTCCACGGCGGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCTGACTGTGCCTTCATGGTGGACAACGAAGCCATCTACGACATCTGCCGAAAAAACCTGGACATCGAGCGTCCCACTTACACCAATCTCAACAGGCTCATTGGGCAGATCGTGTCTTCCATCACGGCCTCGCTGAGATTCGACGGAGCTCTGAATGTGGATCTCACAGAGTTCCAGACCAACTTGGTGCCCTACCCACGTATTCATTTCCCTCTGGCTACATACGCTCCTGTGATCTCTTCTGAAAAGGCATATCACGAGCAGCTCTCTGTGGCTGACATTACCAACGCCTGCTTTGAGCCGGCTAATCAGATGGTGAAGTGTGATCCTCGCCATGGTAAATACATGGCCTGCTGTCTGCTGTATCGTGGAGATGTGGTGCCCAAAGACGTCAACTCCGCCATCGCTGCCATTAAAACCAAACGCACCATCCAGTTTGTAGAGTGGTGCCCGACTGGATTCAAAGTAGGTATCAACTATCAGCCACCAACTGTGGTTCCTGGTGGAGATCTGGCCAAAGTTCAGAGAGCCGTGTGCATGCTGAGCAACACTACAGCCATTGCTGAGGCCTGGGCTCGTCTAGACCACAAGTTTGACCTGATGTACGCCAAGAGAGCCTTTGTGCACTGGTATGTGGGTGAAGGAATGGAGGAGGGAGAGTTCTCAGAGGCCAGAGAAGACATGGCAGCTCTGGAGAAGGATTATGAAGAAGTCGGCACTGACAGCATCGGAGATGATGAGGACGGAGtggaattttaaatgcagtttgtttGTAATCTCAGGGTAATCTGATATTAATTTCATCTTctaaaatgcagcattttagTGTTTTGGGGGGCTATACATTCTATAGTATCACTTCATAAAGAGTACAAGTTACCACAATAGCTAACGCAAAATATTAACAGAGAATACTTTTACAGCATGTATTAATCTTtggtcattttatatatttaaaaatgttaacacgAATTGAATTGTTAACACGTATATgatcaataataacaatactttaATTCaccaagattaataaatgatgtaaaaaattGCATTGCTAGTTCatattacttaatgttaatgcattacCGAAATGTACCTAATTCTTTTTCTGCTTTATGTCCTATGCAAAAGTTCTAtctattaaaaaagtaaatgtagaACAAAAAGTGAAACAATTAAATGTCTGGTGACAAGCTCTTTCTAAAAA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101258 lncRNA downstream 5616 7327829 ~ 7341494 (-) True G68473
TU101108 lncRNA downstream 193156 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA downstream 193156 7146440 ~ 7153954 (-) False LOC122351350
XR_006251860.1 lncRNA downstream 311749 6982678 ~ 7035361 (-) True LOC122352164
XR_006251826.1 lncRNA downstream 451713 6892652 ~ 6895397 (-) True LOC122351994
TU101275 lncRNA upstream 31968 7381290 ~ 7381508 (-) True G68489
TU101356 lncRNA upstream 465927 7815249 ~ 7818832 (-) True G68555
TU101355 lncRNA upstream 470686 7820008 ~ 7821889 (-) True G68554
XR_006251831.1 lncRNA upstream 1121541 8470863 ~ 8474578 (-) True LOC122352023
TU101773 lncRNA upstream 1412449 8761771 ~ 8835225 (-) True G68822
XM_043248156.1 mRNA downstream 824 7343107 ~ 7346286 (-) True tuba8l3
XM_043248157.1 mRNA downstream 10724 7330104 ~ 7336386 (-) True dnajb2
XM_043248159.1 mRNA downstream 10727 7329082 ~ 7336383 (-) False dnajb2
XM_043248158.1 mRNA downstream 10727 7329082 ~ 7336383 (-) False dnajb2
XM_043249054.1 mRNA downstream 45582 7295578 ~ 7301528 (-) False desma
XM_043249596.1 mRNA upstream 531856 7881178 ~ 7892408 (-) False si:ch211-67e16.11
XM_043249595.1 mRNA upstream 531856 7881178 ~ 7892408 (-) True si:ch211-67e16.11
XM_043248744.1 mRNA upstream 588730 7938052 ~ 7947803 (-) True si:ch211-67e16.4
XM_043248746.1 mRNA upstream 590476 7939798 ~ 7947805 (-) False si:ch211-67e16.4
XM_043248745.1 mRNA upstream 591811 7941133 ~ 7947805 (-) False si:ch211-67e16.4
TU101110 other downstream 198490 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 1086041 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1247227 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 1303185 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 1424290 5919757 ~ 5922820 (-) False LOC122351463
TU101496 other upstream 665127 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 729814 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 991621 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 2558866 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 3084185 10433507 ~ 10441872 (-) False trim13

Expression Profile