RNA id: XM_043249680.1


Basic Information

Item Value
RNA id XM_043249680.1
length 2823
RNA type mRNA
GC content 0.43
exon number 3
gene id ramp1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10757241 ~ 10781253 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGAACACGACAGCGTAACTTACAGCGGTTCCCTCACTTCTCCAATTAACTACGTTCACGTTTATTATTAGCCAGCATAAGTTGATGAGCCGCGAGGGAGGTGGCTTCGCGTTTACCGTCGCCGCGAGCGCAGCTCACTCGTTTCAGTAGTGCGCCTGACGCGCGCCGGAGCGCACAGCCGGTCTCTCCACGAGCGACTTCAGAGAGAACTACCGCGCGAACTCACTTCAGCGGCGCGTCTCCGCTTCGTCGCGTCACAATAAAGCGCTGCTTCGCGAAACGCACGGCATGGTGACCGAGAGGAACGGAGGGATTCTCTCTCCTGCGTCTTCAGCGGAGCTTCGGCGCTGAATGAAACCGTCTGCGAAATTAGCTGTCAAAGGCGCAGATGTGCGGAGAGTGGAGAAAGTAGAGCCGTTTAGCGACTATCGACAAACTTCTGCTGCTCTGACTGACATCGACACGTCATGGCATCGGTGTCGTGGAGACACGCGCTCTTCTTCTCGCTTGTTGTGAATCTGTCCGTGCTGGCGACAGCATGCAGCAGTCAGTATGGAAATGCCATTGAGGAGTTCTGCCTGGCCAAGTTCAAGCTGGACATGGAGGTTCTCGATCAGCGCCAGTGGTGCAGCTGGGAGGACACAGTTGAGTCATATGGAGAACTGACCAACTGCACGTTCCTGGTGGCTCTGAAGATGAACTGTTTCTGGCCCAACCGCATGGTGGACGAATTCTTCATCCGGGTGCACAGGCACTACTTCCGTGACTGCTCAATGTCTGGACGGCTGCTTCACGATCCACCCAATCGGATCTTGGGGCCTTTTATCGTGGTGCCCATTCTGGTGACGCTGCTCATGACTGCTCTTGTGGTCTGGAGGAGTAAACGCAGCGAGGGAATCGTATAATCATCTAcgaaaaaaactgaacaataCAGAAGGGGATTTTTCACAGActgcaaacacaaagaaagactTGTTTCTCATCAAGTGGTTGTAAATCCAAACGGTTGTAGTGAACGCTGTCACTCTTATCTGCACACAGATAACATACCAGTCATTTATACagacagaaacatttctttgaGGTAGTTTTCAACTAAGTATTTTGTCATGGCAGTATTCTGTCAGTAAAACTGATCTCCAGTCTGGAGGTCTGGAAGTCATTATCGTGATGACGGATACGTTTCACCTCGGATGGACACACACCAAACTAGGGAGGACACTGTTAATCCCACGAGTTTGCAAACCTTTACCATCTTGTGAACATTGGACACTGAACAATCCCTTTGCGTCACCCATCATCCTCGGTGAATTTCACACTCATAAATGTGCTTTGTGCCAAATGATGacattcattcagtcagtcagtcattaTTAGTGTACTTTTGTTGAATTAAGAAAGACGAGGAAGAAAGGAAGAGGGCTACAACCACGAACATGCCAATGatattcacattattattattattaatcccTAAAATGAACATCACCATCGGATATTGTAAGACACtcaaaaagctgtaaaaaaatcttaaggTCTAAACTGAATGTATCTTTCATACAATAGTCAATCTCACGATGCATTGCTTCATCAAAAAAAAGTATCCAAGATTTTGGAGAGATGTGATCAATTTGCTTCATTTAAGTActgaaagaaatcaataaaaacctttaaattacAATCAAAAATTGACTATTGGACACAATGTGTGGTGTATATAGTGCAGACCAACAACAGCATCTCTGAGAAAACCAACTCTCCGTCTGTCAGTGCAGAGTAAATTCGGCTAAAGACTgcgtctttttgttttaaatcagaatAGAATGCTATTAGGGACAATGTGCTATACTGCGTTGCATTTAACCTTTTACTTGCTTAAAAGTCAAAAGTGTTCGGTTCAGTGTTATCATGAAAAGCCCCAATTGTGTAACTCTCTGCCGAAGAGATAAGACATCTACAGTATATACTGCAGACAACAGACAGTCAGGCGGCTCATCGGGTTCTGGATCAGAGCCGCAGTGCTTTGTGCTAACAGTGGCTATCAGATACTATTAGAAGCACTGAACCAGAAAGGatcactgcatttatttggtgtCTCTCATCTCATGGGCTCTCGTCATAAGGTCATGTCGAGGGAAAATATTGTCTTTCTGTAGCGGAGAGCAACCTACCGGCTAAGAAGCTTGCAGCCTTTTTTGTGGAATAATTCATATATTAGCACTAaaaggatgttttcattcgcaTGGTTCTGCTAATTGCTTTTTAAGCTATATCTGTGTATCTCTGGAGCTCTGTACCCACAGTGAGTGGTTTAAAAGCCTGTAGCGAACTGGACAGTGGCGCAGAGACGGTAGACTTTTCTAATGTCAGCTGAATTTCAAAGCATCTGATTTCTGTTGCCGTTATAATAAAGCCGTTATAATAATTTTCCCTCATTTGAGATTTGCTTTGTAACGCATCATGTGCTGTCAGGAGAACAAAGAGTGACAAAGGTAGCCATGTGGTCTTGAGTCACCAAAATTTAGCTGTTAAATTACAGCAGATCAGATAGAGCATAGTAGTTACTAAACTAGTTTGATGTCTGTTACATGATTTTGATGTCTCTGCATTTTGTAGCAAGAAGGATGTTCAAGTGTTCATGTGCTGTGTTCTTTTTACTTTCAACTTAATTCTgtaatgccattaaaaaaaaaaaaaaagaaattattgtaaataactGCCTGCATCACCAATGCATCACAATTTTATAATGCGAATTTGAAACCTAAATCAGtactccattaaaaaaaaaaaagaaaagacacgaAGGAAAGAACTCAAATG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K08447 RAMP1; receptor activity modifying protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102207 lncRNA upstream 240909 10515306 ~ 10516332 (+) True G69109
TU102155 lncRNA upstream 299155 10449007 ~ 10458086 (+) True G69075
TU102162 lncRNA upstream 300080 10448701 ~ 10457161 (+) True G69080
XR_006251821.1 lncRNA upstream 322099 10423990 ~ 10435142 (+) True LOC122351945
TU102467 lncRNA downstream 2212 10783465 ~ 10783702 (+) True G69284
TU102468 lncRNA downstream 3109 10784362 ~ 10784599 (+) True G69285
TU102469 lncRNA downstream 4923 10786176 ~ 10786462 (+) True G69286
XR_006251705.1 lncRNA downstream 22607 10803860 ~ 10814619 (+) True LOC122351147
TU102528 lncRNA downstream 52535 10833788 ~ 10834682 (+) True G69340
XM_043248755.1 mRNA upstream 1356 10729162 ~ 10755885 (+) True epb41l5
XM_043248756.1 mRNA upstream 1356 10729162 ~ 10755885 (+) False epb41l5
XM_043248758.1 mRNA upstream 1356 10729162 ~ 10755885 (+) False epb41l5
XM_043248759.1 mRNA upstream 1356 10729162 ~ 10755885 (+) False epb41l5
XM_043248757.1 mRNA upstream 1356 10729162 ~ 10755885 (+) False epb41l5
XM_043249484.1 mRNA downstream 54835 10836088 ~ 10839687 (+) True LOC122352014
XM_043249485.1 mRNA downstream 54835 10836088 ~ 10839687 (+) False LOC122352014
XM_043249486.1 mRNA downstream 54835 10836088 ~ 10839687 (+) False LOC122352014
XM_043249487.1 mRNA downstream 54867 10836120 ~ 10839687 (+) False LOC122352014
XM_043249488.1 mRNA downstream 54867 10836120 ~ 10839687 (+) False LOC122352014
XR_006251850.1 other upstream 362011 10328731 ~ 10395230 (+) False il1rapl1a
XR_006251853.1 other upstream 1200594 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 1607575 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 1607580 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 1891344 8864649 ~ 8865897 (+) False cryba2b
TU102754 other downstream 702184 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 1265246 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 1846282 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 1949583 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 1951380 12732633 ~ 12741060 (+) False LOC122351618

Expression Profile