RNA id: XM_043249716.1


Basic Information

Item Value
RNA id XM_043249716.1
length 1838
RNA type mRNA
GC content 0.52
exon number 4
gene id hoxd3a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4417288 ~ 4423340 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCTGgcttttaaagtgtatttgtGAGGTGAAGCCGGTTGGAGTAGCAGTCTCAATCAGGACGATCTGCGATCCGGATCACGTGAACAAATATGCTCGCATTTTAAGGCAGCGCCTTTATTTGTCATGATAAGCTTTCCGAAATATACTAATGTCGACTTCGTCCCGCCAGCCTGCCTCCGTAAAAcgttcgctttttttttttttttttttcaaacggGAAGCTGATCGCTAGTAATATTTCGTTTTGGAATAAGAAGACCTTCTTGGCTTTTTATTGGTAGCTGAGTGAGTGGCTCCCATTCTTTCGGGAATACTGTCCGCATCGGTATATGGAAATGCCTGGAAAAGCGCGAGATCAGTTTTAAGACAGTACTTGTCTATAGACAAAGGGTGAAGGATATATCCGAGCGGCAGAACTGAGAGATATTGAGACTAAGAAGCACGGCTATATAATAAATTGACATCGCAGgTCGCCGTCTAAATGATGAAGACCGCTTGAGGAGAAACAGAGGAGAGAAAGCCACAGATTGCGGTCAAAGGACAGAAAATCTGTGGGAAGCTGCAATCACGTGATTGACAAGTCCATGCGATTGGACAGGGGTTCACAGGCTCTCTTAGTTTGAACCTTCGCCATGCAGAAAGCCACTTATTATGACAATGCTGGACTTTTCGGAGGATATTCGTACCCTAAATCTGACTCCTACGCGTACGGTCCTGCACACCAGGGCTTCTCGTCCTCCAGCATAGACAACGACTATCAAAATCCGATCTGCCCCATCCAAACCACGCCGGTCCGGCCGCCAGCACATAAAAATGGAGACATCAACGGCAGTTGCATGCGGCCAAGCGCCAGCCAGGGCAACAGCCAAACAGAGAGCATCagtgagcagcagcagcagcagcagcaggctgCTCCTTTAGCGGCCAGCTCACCCAGCCCTAACAGCAACTCCAcgcaaaaaaagaaatctcCCAGCACCACCGGCTCCAGTACTGCCACCCCAGTCATCACCAAGCAAATCTTCCCTTGGATGAAAGAGACGCGCCAAAACGCAAAGCAGAAAAGCACCAACTGCCCAGCTTCAGGAGAAACCTGCGACGACAAGAGTCCACCCGGCCCTGCGTCGAAACGAGTGCGCACTGCCTACACCAGCGCCCAGCTGGTCGAACTGGAGAAGGAGTTTCATTTCAACCGCTACCTGTGTCGCCCCAGAAGAGTGGAAATGGCTAATCTGCTCAACCTCACCGAGCGCCAAATAAAGATCTGGTTTCAAAACAGGAGGATGAAGTACAAAAAAGACCAGAAATCCAAAGGCATAATGCACTCTCCCTTAGGACACTCTCCGGACAGGAGCCCGCCGTTAAGCGGCTCGAATCACATTGGATATTCCGGTCAGCTTCCAAACGTGAACGGCCTGAGCTACGACGCGCCGTCTCCTCCGTCGTTCGCCAAACCGCAACAGAACATGTACGGCTTGGCAGCCTACACGGCGCCGCTGGGCGGATGCATACCGCAGCAGAAAAGATACCCGGGGACAGAGTACGAGCACCACGGCATGCAGGGCAACGGGAGCTTCGCGAACGCCAATTTACAAAGCAGCCCCGTTTACGTCGGGGGAAACTTCGTTGATTCGATGCCGGCCTCGGGCCCGATGTTCAACCTCGGTCATCTCCCCCATCCCTCATCCGCTAGCGTGGACTACAGCTGTGCCGCCCAGATTCCGGGTAACCACCACCACGGACCGTGTGACCCCCACCCCACATACACAGACCTCAGCTCTCACCACGCGTCTCAGGGAAGGCTGCAGGATGCGCCCAAACTCACGCATCTGTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09303 HOX_3; homeobox protein HoxA/B/D3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100097 lncRNA upstream 13078 4351701 ~ 4404210 (+) True G67680
TU100104 lncRNA upstream 60475 4355005 ~ 4356813 (+) True G67684
TU100017 lncRNA upstream 195117 4219975 ~ 4222171 (+) False G67630
TU100015 lncRNA upstream 197778 4217050 ~ 4219510 (+) False G67630
TU100051 lncRNA upstream 208747 4207690 ~ 4208541 (+) True G67657
TU100146 lncRNA downstream 99946 4523286 ~ 4559028 (+) False G67717
XR_006251713.1 lncRNA downstream 149234 4572574 ~ 4575436 (+) True LOC122351246
TU100155 lncRNA downstream 149336 4572676 ~ 4575430 (+) False LOC122351246
TU100157 lncRNA downstream 149336 4572676 ~ 4575525 (+) False LOC122351246
TU100192 lncRNA downstream 254110 4677450 ~ 4685181 (+) True G67752
XM_043249717.1 mRNA upstream 4128 4409895 ~ 4413160 (+) True hoxd4a
XM_043248300.1 mRNA upstream 16216 4398723 ~ 4401072 (+) True hoxd9a
XM_043248345.1 mRNA upstream 19710 4394716 ~ 4397578 (+) True hoxd10a
XM_043248258.1 mRNA upstream 25277 4389648 ~ 4392011 (+) True hoxd11a
XM_043248255.1 mRNA upstream 30285 4385439 ~ 4387003 (+) True hoxd12a
XM_043249762.1 mRNA downstream 124161 4547501 ~ 4555749 (+) True hnrnpa3
XM_043249761.1 mRNA downstream 124161 4547501 ~ 4553177 (+) False hnrnpa3
XM_043249604.1 mRNA downstream 152842 4576182 ~ 4610978 (+) True agps
XM_043248346.1 mRNA downstream 279346 4702686 ~ 4706137 (+) True si:ch211-222f23.6
XM_043249767.1 mRNA downstream 285713 4709053 ~ 4716912 (+) False rbm45
TU100101 other upstream 4146 4410876 ~ 4413142 (+) False hoxd4a
TU100018 other upstream 195117 4141054 ~ 4222171 (+) True G67630
TU100016 other upstream 196893 4217050 ~ 4220395 (+) False G67630
XR_006251811.1 other upstream 291838 4120527 ~ 4125450 (+) False scrn3
TU99910 other upstream 433706 3981527 ~ 3983582 (+) False G67566
TU100144 other downstream 133803 4557143 ~ 4562602 (+) True G67717
XR_006251862.1 other downstream 285713 4709053 ~ 4717233 (+) True rbm45
TU100423 other downstream 592293 5015633 ~ 5018338 (+) True c9h2orf76
TU100453 other downstream 716873 5140213 ~ 5142152 (+) False ndufb3
unassigned_transcript_1318 other downstream 981889 5405229 ~ 5405301 (+) True trnar-ccu_4

Expression Profile