RNA id: XM_043249720.1


Basic Information

Item Value
RNA id XM_043249720.1
length 1816
RNA type mRNA
GC content 0.52
exon number 8
gene id zgc:92380
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 24789506 ~ 24797054 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAAAACAGCAGTCCGCTTCTCACAAGCACACTCAAAGGCACCTCCAACCGCAACCATGTCGTTCAAGAGCCCTTCCAGGAGTTTCTCCAGCTCAAGTCTGTCTGGCAGCATGGGGTCGAGGGCCAGTCTGTTCGGGGCCATTTCCCCGTCTGCCATAGGGAACCTGGCGAACACACTGCGTCCGATGGTGCAGATCAACAGCAgcgcttttgcagcagctgacGACAAAGAGACCATGAAGGGCCTGAATGACCGTCTGGCGGGGTATCTGTCAAAGGTTCGACTCCTGGAGGACTCCAACAATCAGCTGGAGGCGCAAATCAAAGAGGCCCTGATGAGAAAAGGAGCCGAGAGCGGCAGAGACTGGAGCGCCTATGAGAAGATCGTCGCGGATCTGAGAAACCAGATCCAGGAAATGACTATGGACAATGCCAGACTTTTTCTGCAGATAGACAATGCGAGGCTGGCTGCCGACGATTTCAAAATCAAGTTTGAGTCGGAGCAGGCCATGAGGCAAGGGGTGGAGCAGGATCTGGCGCGTCTCCGTAAGATGCTGGACGACACTTACATGGGCCGCATGCAGCTGGAGAGCCAGATCGAGTCTATGAGAGAAGAGCTGGCGTTCCTCAAGAAGAGCCACGACGAGGACGTTGCCAACCTGAAGAGCCAGATCAGCGACTCCCAAGTCAATGTGCAAATGGAGACGAAAAACAACGCAGACCTCAACGAGGCCATTAATAACATCCGCACGCAATACGAGAGAGCCGCGCAGAAGAGCCGCGAGGATACCGAAGCCTGGTATCAAAACAAATTTGACAACATCACAGCTGAGGTGACTCAGAACACAGAAGCTCTGCAGGCAGGAAAGACGGAGCTGAACGAGCTGCGCAGGCAGAAACAATCGCTAGAAATTGACCTGCAGGCTCTGCACAACATGATTCGTTCACTCGAGGACTCTCTGCGTGAAACGGAGGCACGTTACGCTCACGAAGTCACGGGGTACAACTCTCGAATCCTGCAGCTGGAAGGAGAGCTGGGACAGGTGCGGGCGCAGGTGGAGCGGCAGGCGGCCGAGTACGAGGCCCTGCTCAACCTCAAGACCAAACTGGAGGCAGAGATCGCCACCTATCACCGTCTCCTGGAGGGTGTCGTTGACGACAAGGAGGACAAAAACAGAGAGGATTTTTCTTTAGAGCAGGCGTTGTATGCAGctcctcctcctcctcctcctacgTCCGTCGGACTTAAGAAAgccatcatcatcacacaagaaATAGTGGACGGAGAAGTGGTCTCTCAAAGTGAACTTGAGCAAAATCTTATTATTCACAATGACCTGGAAGATTCTGGGGAGGATCAGAAGTTGACAGAACAACTGGAGCTAGCGTTGGAAGAggcaaaagcagaaaaacaggAGTTAGCAGAACAACAGAAGCTAGCGGTGGAAGAGGTGAAGGCAGAAGAGAGAGTGGGACAACAGCTGGAGTTAACAGTGGTgaaagcagaagaagaaaaagtagAAGATCAGCTGGAGTTGGTGGTGGAAAAGGTgaaagcagaagaagaaaaaataacagAACAGCTGGAGTTGGTGGTGGAAAAGGTgaaagcagaagaagaaaaaatagcaGACCAGCTGGAGTTGGTGGTGGAAAATGTgaaagcagaagaagaaaaaatagcaGACCAGCTGGAGTTGGTGGTGGAAAAGgtgaaagcagaggaagagTTAACAAAACAACTGCCATTAGTGAAGGAAGGTGAGTTAGTAGGCGATAGAGAAGTCACATgctgaggatgaggaggaggaagaag

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108285 lncRNA downstream 10851 24776160 ~ 24778655 (-) True G73175
TU108266 lncRNA downstream 43568 24739326 ~ 24745938 (-) True G73160
TU108133 lncRNA downstream 218394 24564881 ~ 24571112 (-) True G73084
TU108125 lncRNA downstream 268198 24513094 ~ 24521308 (-) True G73077
TU108009 lncRNA downstream 505341 24281991 ~ 24284165 (-) True G72984
TU108295 lncRNA upstream 3984 24801038 ~ 24801377 (-) True G73179
XR_006251791.1 lncRNA upstream 15262 24812316 ~ 24820878 (-) True LOC122351686
TU108298 lncRNA upstream 15262 24812316 ~ 24821062 (-) False LOC122351686
TU108303 lncRNA upstream 42552 24839606 ~ 24839961 (-) True G73186
XR_006251708.1 lncRNA upstream 295582 25092636 ~ 25094799 (-) True LOC122351187
XM_043248763.1 mRNA downstream 3269 24784903 ~ 24786237 (-) True LOC122351587
XM_043248760.1 mRNA downstream 17247 24768285 ~ 24772259 (-) True LOC122351585
XM_043248413.1 mRNA downstream 24651 24761541 ~ 24764855 (-) True cxcr2
XM_043249729.1 mRNA downstream 30849 24754888 ~ 24758657 (-) True mettl5
XM_043248298.1 mRNA downstream 55724 24728368 ~ 24733782 (-) True ccdc173
XM_043248249.1 mRNA upstream 6569 24803623 ~ 24807781 (-) True gpbar1
XM_043249181.1 mRNA upstream 662841 25459895 ~ 25462849 (-) True LOC122351834
XM_043249028.1 mRNA upstream 1033924 25830978 ~ 25853303 (-) True LOC122351758
XM_043249521.1 mRNA upstream 1065699 25862753 ~ 25919696 (-) True LOC122352035
XM_043249390.1 mRNA upstream 1268158 26065212 ~ 26067013 (-) True gcgb
TU108001 other downstream 508798 24220522 ~ 24280708 (-) False G72978
TU108002 other downstream 508798 24231235 ~ 24280708 (-) False G72978
TU108000 other downstream 508798 24271455 ~ 24280708 (-) True G72978
TU107931 other downstream 829181 23956219 ~ 23960325 (-) False grb14
TU107929 other downstream 858177 23930207 ~ 23931329 (-) True G72930
TU108324 other upstream 230531 25027585 ~ 25030965 (-) True G73201
TU108463 other upstream 551724 25348778 ~ 25349640 (-) True G73301
TU108462 other upstream 659360 25456414 ~ 25458742 (-) True G73300
TU108524 other upstream 993463 25790517 ~ 25793056 (-) True G73347
TU108525 other upstream 997029 25794083 ~ 25832356 (-) False LOC122351758

Expression Profile