RNA id: XM_043249722.1


Basic Information

Item Value
RNA id XM_043249722.1
length 1853
RNA type mRNA
GC content 0.40
exon number 5
gene id ecrg4a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6883488 ~ 6888374 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGTCGGCCATGTTCTCTCGCTGGCAACGTTTTATTTCGTACGAACTGCGTTTGgtgataaaatgttaaaacacgAGTTTCACGAGTAcgattatttcatttattatgtcaTCCTGGTATCGCGTTTCATACAAACGCAGCGGCTGCAACTATTGTTTTGTAATCTGTGGACTAACAAACGGCAATTTTCTGTTGCTGTTCAAGACCAAGGTCAGTGGACATTGATTTTGCCATTGATGagttattattacagttattaacACATGTGAAAATTGACTCAGAATTAAACAAATAGCTGAAACCTGACTCTTTATAGCAGTTTTTCCCGGtgattaatgaatgaaaaaaaaaaactaaatatgtatGTTTGCCTGTCCAAAGAAAAATGCTAAACAAAACGCATCATATTTTGCGAGAAAGCATGAATCGTACACTTTTTCCTGGAATAAGAACCCCAAATTTTGTAAGAAACGTAGGTCTCTTTCAGCACAAATAATGCTGGAGTagattttaccaaaaaaaatacagtttcactCTTTGTACCTggaattttttgtttaatttagtgcgtgcttgccatttctttgtaatttttcCCAGTAATTTTCGAAGTGCAGTAAATCATACGCCATACATCTTTATAAAATAACTCAACATGAGGAGGTTTAAACAATTCAAAGCAGTATCATGTTTCACTACGAAAAGCCTGCAACCCCATTTAATGTGGAAAAATACTAACGGTGCACATGTGCAAGTGCTTAAATGTACAAGGAGACAGGGTCTTTTTGTCAGCCGACGTAGTTTACAGTAATTTGCCAGCTGCAATTTCCGTTGAGAGTGTTTGCGTGGGCTTCCCTTGggctctctcctcctctctcctcctcctctctctgagCTTGTTTTGCAGATCGCTGTGCAAATCGAAAGAGAAGACAACAAGAAATCATGGTTTCTGAAAAGTTTTACTTGCGCTTGCTCGCCTTTGTGACCTTGTTGACTGTACTGGCACTCTCGgATGTCGCAAGTGAGAGCACTCTGGAAAAACTCTTGATGAAAAAAGTGGACGGCGAGGTAAAGCCAGCAGCAGCTGTGGCTGTGACTCCCTCCAGGGCCAAACAGTTCCTGGCCTCCCTTAAAAGACCCAAGAGGAACCTGTGGGACCGGAGCCGCCCTGACGTTCAGCAGTGGATCCAGCAGTTCATGTACATGGGCTTCGATGAAGCAAGACTTGAAACGGATCTGGCCTACTGGCTGGACCACTACCAATCCAGTGACCAGGGTCGCCAGCATCACTACGATGAAAACTCTCCCATGGGGCCTCGCAGCGCTGGCTCTTACAGGCACGGGGCCAATGTCAACTATGACTACTACTAAACACCAAAGGCATAACCACTTTGATTTACCAGAGTGACAGCAGCTTGATCCTTCCTTCTGTAGCTTGTACTTCcttttgcaaatgaaaataacacagaaaatgGAAAGTCAATTTTAATAGTTTACTTGAAATTAACAAAAAcgtataaaaagtaaataaaataacctagggtgtttgtttttgaaataaatgaacaaaaggaCATATAAAAGGACAGATTAAATTGAGCAAAGAAGGCAGTTAATAAATGtctacaaaatatattttgaactttctgtttataaaacttaaaattgaCCAGAAATCTTTCTTGAACAACAACTGTTTGAATGGTTTCTGGAGGATCACGtgagactgaagactggagtaatgatgctgaagatTCAGTTTTGTGTCTGACAAATTTATGAAATTTTCAGGGCTTTGATTTCCGCAAGGAGGATatgtaactaaataaaaataaaattcacagtTTAA

Function

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0007417 central nervous system development biological_process
GO:0030133 transport vesicle cellular_component
GO:0005576 extracellular region cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101086 lncRNA downstream 512 6882585 ~ 6882976 (-) True G68357
TU101051 lncRNA downstream 70473 6809848 ~ 6813015 (-) True G68328
TU101058 lncRNA downstream 89113 6793402 ~ 6794375 (-) True G68333
XR_006251776.1 lncRNA downstream 106514 6775286 ~ 6776974 (-) True LOC122351577
TU101056 lncRNA downstream 107073 6775074 ~ 6776415 (-) False LOC122351577
XR_006251826.1 lncRNA upstream 4278 6892652 ~ 6895397 (-) True LOC122351994
XR_006251860.1 lncRNA upstream 94304 6982678 ~ 7035361 (-) True LOC122352164
TU101108 lncRNA upstream 258066 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA upstream 258066 7146440 ~ 7153954 (-) False LOC122351350
TU101258 lncRNA upstream 439455 7327829 ~ 7341494 (-) True G68473
XM_043248737.1 mRNA downstream 51234 6807329 ~ 6832254 (-) True tmtops2b
XM_043249753.1 mRNA downstream 156690 6719754 ~ 6726798 (-) True si:ch73-390b10.2
XM_043248124.1 mRNA downstream 175280 6686218 ~ 6708208 (-) True LOC122351204
XM_043249750.1 mRNA downstream 284290 6501409 ~ 6599198 (-) True LOC122352171
XM_043248918.1 mRNA downstream 385284 6492609 ~ 6498204 (-) True abhd13
XM_043249561.1 mRNA upstream 8103 6896477 ~ 6943442 (-) False nck2a
XM_043249562.1 mRNA upstream 8103 6896477 ~ 6943442 (-) True nck2a
XM_043249559.1 mRNA upstream 8103 6896477 ~ 6943439 (-) False nck2a
XM_043249563.1 mRNA upstream 8103 6896477 ~ 6925051 (-) False nck2a
XM_043249415.1 mRNA upstream 76855 6965229 ~ 6969207 (-) False c9h2orf49
TU100887 other downstream 622419 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 783605 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 839563 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 960668 5919757 ~ 5922820 (-) False LOC122351463
XR_006251815.1 other downstream 1513899 5349955 ~ 5369589 (-) False LOC122351925
TU101110 other upstream 182611 7070985 ~ 7148620 (-) False LOC122351350
TU101496 other upstream 1126075 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 1190762 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1452569 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 3019814 9908188 ~ 9910178 (-) True LOC122351483

Expression Profile