RNA id: XM_043249731.1


Basic Information

Item Value
RNA id XM_043249731.1
length 2862
RNA type mRNA
GC content 0.52
exon number 2
gene id pou3f3a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6987723 ~ 6990768 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGCTGAACGTAAACATTCGCGTGCTCTCGCGCTCAGAGAGAGGAACGGAGCGAGCGAGGACGGCGAAGGCTCTCCGTTGCGCGGGCATTTAATAGAGCTGTGCGCGGTTGAACGTGTCGAAGATTACCGTCAGATGGACTCtatgaaaagaagaaatgtgaGAGGCGAGATTCGGTGAGGGAGCGGGACAAGAGAGAAGTTTACGAAGGAGCGTCTTCTTCTGATAAGGCTTCTCGTCGGGTCAGGAGCGCGCGCGATGAAGTTCGGTGTGGGATTTGTGTAATCGTCACGAGAAGTTGACGCGAAGGAGAACGAACAAGACTTTTTTGGTTTCGTAATTGGTCTTTAAGACGATGACATTGAGGACGGAATGCAATCGCGAAAACAGCTTCCGTGCATAATGTGGATTTCTGCGCGGGAGGTGTCTCCTTTTGCTTCTGATAAAAGGAGGTTTTGACGGATATATTTTGGCCATCTTTTGCTGTGCCGTCGGTGGACCAAATCAAAATACCGCGCATACTTTTCCAGCTTGAATAATTCATGAAATAGTGCGTGCCTTCGAGGCTTGGAAAAAAGTTACGGCGATACGGGGAGGGGGGAATAACAAGTAGAATTGTTCACAGTGGTGAGGGGGGATGGCCACGGCGGCTTCCAATCCTTACCTGGCCAGCAATAGCATTCTCTCGTCAGCCTCGATCGTGCACTCGGAGTCCGGAGGTGGTGGCATGCAGCCGGGAAGCGGTGCTGTAACATCGGTGTCGGGAGGTTACCGGGGAGACCCCGCGGTCAAGATGGTGCAGAGCGACTTCATGCAAGGAGCCATGGCGGCCAGTAACGGGGGGCACATGCTGAGCCATGCCCATCAGTGGGTTACCTCGCTGCCGCACGCGGCCGCCGCGGCCGCCGCCGCCGCAGCCGCCGCGGCGGCAGAGGCCGGTTCCCCGTGGTCCTCCAGCCCAGTCGGCATGGCCGGGAGCCCACAGCAACAAGACGTGAAGAACAGCTCAAACAGAGACGACCTGCACTCCAGCACCGCGCTTCACCACAGAGCCTCGCATTTAGGGGCTCACCAGTCGCACCAAAGCGCATGGGGTGGCACCGCAGCCTCCCACATCCCCACCATCACCGGAGGACAGCAGCAGTCCCAGCAGTCCCTCATCTATTCCCAGCCGGGTGGCTTCACGGTCAACGGGATGCTGAACCCTCCCGGGAGCCTGGTCCACCCCGGGCTGATGCGAGGAGACTCGCCAGAGATGGAtcaccatcaccaccaccaccaccatcagcagcagcacccccaccaccaccaccaccagcagcagcagcaccacGCGGGAGTCAACAGCCACGACTCGCACTCGGACGAGGACACGCCGACCTCCGACGACCTGGAGCAGTTTGCCAAACAGTTCAAGCAGCGTCGGATCAAACTGGGTTTTACTCAAGCCGACGTCGGGCTAGCGCTGGGGACCCTTTACGGAAACGTTTTCTCGCAGACCACCATTTGCAGGTTCGAGGCTCTCCAGCTGAGCTTCAAAAACATGTGCAAACTCAAGCCGCTGCTGAACAAGTGGCTGGAGGAGGCCGACTCGACCACGGGCAGTCCCACCAGCATCGACAAAATAGCGGCTCAAGGCAGGAAGCGAAAGAAGCGCACCTCCATCGAGGTGAGCGTGAAGGGAGCCTTGGAGAGCCATTTTTTGAAATGCCCCAAGCCGTCAGCGCAGGAGATATCCTCTCTGGCGGACAACCTGCAGCTGGAAAAGGAAGTGGTTCGGGTCTGGTTCTGCAACCGAAGGCAGAAGGAGAAGAGGATGACGCCGCCTGGGGTCCCTCAGACGCCCGAGGACGTGTACAGCCATGCCGGCAACGTGAGTGCAGACACACCGCCTCCGTCCATGGACTGCAAACGGGAGTTTTGTGGTAGATTACTTAAAAGGTGCAAGTTTGAAAGATGAACCGGACAGCAACCACAACGTGACAACAACCGCGAGCTCCTACGGCCAGGAGATTCTGGTGCACTGACACCCAAATCAGAACCAGCCCAAAGCCAACGTAGACTTTACGGATTGAAATTTAACGAAAGAACTCCCGAGGACGCGGACCGACGCAGACGAACACTAAATATCGAACAGCGGAAGAATTTACCCCAGGACACGTACCGGTTTTACGCACAGGAATTATATCACTCATTTTAACAAAACGGAATCGTCTTGTCTGCTTCTTGGAGCATTACGTGCAACAAACTACACCTTTTctatttcatagtatttttgtGGACCACACTTCCGTGAATAGCTTTTACACAGAGAAAactcttaagaaaaaaaataaggaaaaaaaaaaaaaaaaaaaaagattgattacTCTCGAGCTGCACTTATTTTCAGATTTCAGCCGACCCCTTGTAaactctttttgttgttgtttggctGAATAATCGTGGATATTGCCCTCTCTTCACTGCTTTTTCTAGGCAGGTTTTTTTGGTGGGTTTTGATAACAAGTCTGTGTAAATTTGGCAATATAAATTCTCTGTGTTGATTTAAACgatttgctttatatttttcaactaaaatcaatttcaaaatattttcaggaGCAATGACAGATTCGTCGCGCGCTGTGATGACTTTCGACCTAGTAGCATCTCTTGTAGGCCTCCCCtgccattttaaatattgattatattttatactgttagTATTACACTTGTTATTATATACGGATATTGTACACGAGCACATTGACGAAGCTGAAACAAACCGTTGTCAAACCGTTTCCCCCCGTGGTTGTTATTTAAGTTCAGTTCTGACTCAGCGAGAAGTGAATGAGAACAATAAATCTGATAGCTTTCAGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251826.1 lncRNA downstream 92326 6892652 ~ 6895397 (-) True LOC122351994
TU101086 lncRNA downstream 104747 6882585 ~ 6882976 (-) True G68357
TU101051 lncRNA downstream 174708 6809848 ~ 6813015 (-) True G68328
TU101058 lncRNA downstream 193348 6793402 ~ 6794375 (-) True G68333
XR_006251776.1 lncRNA downstream 210749 6775286 ~ 6776974 (-) True LOC122351577
TU101108 lncRNA upstream 155672 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA upstream 155672 7146440 ~ 7153954 (-) False LOC122351350
TU101258 lncRNA upstream 337061 7327829 ~ 7341494 (-) True G68473
TU101275 lncRNA upstream 390522 7381290 ~ 7381508 (-) True G68489
TU101356 lncRNA upstream 824481 7815249 ~ 7818832 (-) True G68555
XM_043248245.1 mRNA downstream 12815 6969817 ~ 6974908 (-) True gpr45
XM_043249415.1 mRNA downstream 18516 6965229 ~ 6969207 (-) False c9h2orf49
XM_043249414.1 mRNA downstream 18516 6965229 ~ 6969207 (-) True c9h2orf49
XM_043249562.1 mRNA downstream 44281 6896477 ~ 6943442 (-) True nck2a
XM_043248370.1 mRNA upstream 103135 7093903 ~ 7097792 (-) True tmem182a
XM_043248360.1 mRNA upstream 115791 7106559 ~ 7117477 (-) True slc9a2
XM_043248373.1 mRNA upstream 156387 7147155 ~ 7148631 (-) False LOC122351350
XM_043248362.1 mRNA upstream 164211 7154979 ~ 7194511 (-) False mgat4a
XM_043248361.1 mRNA upstream 164211 7154979 ~ 7194510 (-) True mgat4a
TU100887 other downstream 726654 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 887840 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 943798 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 1064903 5919757 ~ 5922820 (-) False LOC122351463
XR_006251815.1 other downstream 1618134 5349955 ~ 5369589 (-) False LOC122351925
TU101110 other upstream 80217 7070985 ~ 7148620 (-) False LOC122351350
TU101496 other upstream 1023681 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 1088368 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1350175 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 2917420 9908188 ~ 9910178 (-) True LOC122351483

Expression Profile