RNA id: XM_043249738.1


Basic Information

Item Value
RNA id XM_043249738.1
length 3995
RNA type mRNA
GC content 0.46
exon number 22
gene id arhgef7a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14408577 ~ 14426806 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACGCATTAGTCGCGCAAAGCGCAGGTGAACCTATGCAGCCCACATGCAAAGCAGGATGCGAAGCCGACTGGTCACATATGCTGTGTCTGTGCTGTGATGTCATCTGCCGGAAGATGCAGGTTTAGTGCGCTGACTGTATTCCAGTGAAAGGCGTTTGACAGCTTGTCGTAATAAAGGAAATGGGAGCGAAGCGATAGAATTACTCATCTCCATGGAGCGCCATATAATGCGCCATCCCTCAAACAACACGTTTTAGAGGAAAATGGTGCCCAGTTCAACGACTGGTTAATAGCAGACAGCCTAATTTTGTCCCCGTTACAATCGTTATACCGAGAGCGTCGACCTTGCTGGTGTGGCCATGAATCCGGCGGAACAAACGGTTACTTGGCTCATTACGCTCGGGGTTTTGGAGTCACCAAAAAAGACCATCTCGGACCCCGATGGATTTCTGCAGGCTTCGCTAAAGGATGGGGTCGTCCTGTGCAGGTTGCTGGAGCGGCTGCGTCCAGGCACTACTGATAAAATCTACCAAGATCCCAAGAACGACAGCGAGTGCCTGAGCAACATCACGGAGTTTCTCAAAGGCTGCGCGGTGTTTCGCGTCGAGcCTTTTGAGGCCGGTGACCTGTTTCAGGGCCACAACTTCAGCAGAGTCCTCACTACACTGGTTGCCCTCAATAAAGTTACCGCAGATATTGGCATAGGCAGTGACTCTGTATGTACCCGTCACTCTTCTGCCCACCGGATCAAGTCCTTTGAATCACTGGCCTCTCAGTCCTCACTGGGACGATCTTCTAAATTGCTCCATAACCAGTTCCGCAGCCTTGACATGACGGAGAACAGTAACGCTCAGTTAATCGTTAAAGCTCGCTTCAACTTCCAGCAGACCAATGAGGACGAGCTTTCTTTCAGTAAGGGTGACATCATCAATGTTACTCGCACAGAGGAAGGGGGTTGGTGGGAAGGATCCCTCAATGGCAAGACAGGCTGGTTTCCAAGTAATTATGTCAGAGAGGTTAAAGGGTCTGACAAACAAGTGTCCCCTAAATCTGGGAATCTTAAAAGCCCTCCCAAAGGTTTTGATACCACATCCATCAGCAAAACCTATTATAACCTGgtgctacagaacattttagaaactGAAACAGAGTATTCAAAGGAACTCCAGAACCTTTTAACCAACTACCTGAGACCTCTACAGATGACAGAAAGACTGATCCCCTCAGATGTAAGTGTCATTCTCGGGAACCTGGAGGAAATCAGCACTTTCCAGCAGACTCTGGTCCAGTCACTGGAGGACACTACCAAGCTTCCAGAGCTGCAGCAGAAAGTGGGAGGGTTCTTCCTGAATCTCATGCCCCAGATGAGGTCTCTTTATGTGTCTTACTGCTCCAACCACCCATCGGCAGTCAGTATTCTCACTGATCACAGCGAGGAGCTCGGGGAGTTCATGGAGGGGAGGGGTGCGTCGATACCAGGCATTCTCACGCTGACCTCTGGCCTCAGCAAACCCTTCATGAGACTGGACAAATATCCCACATTACTGAAGGAACTAGAGAGACACATGGAGGAGGGTCATCCAGACAGGACAGAAATTCAGAAATGTATGACAGCTTTCAAGAACCTCTCTGCGCAATGTCAGGAAGTGAGGAAGCGCAAGGAGCTGGAGCTTCAAATCCTGACTGAGGCAATTCGCCTGTGGGAGGGGGAAGACATTAAGACACTGGGTTCAGTGCTGTATATGAGCCAGGCCATGGTCCAGAACCAAGGCTGTGAGgataaGCATGAACGTTACCTTCTGCTGTTTCCTCATGTTTTACTCATCCTGTCTGCCAGTCCAAGGATGAGCGGCTTCATCTACCAGGGCAAGCTGCCTTTGAGCGGGATGACGGTGACCCCATTAGAAGACTgtgaaagtcataaaaatgcttttgagcTCTCAGGAAGCATGTTTGAGAGACTTCAGGTGATCTGCTATAACAAGCAAGATCTGCAGGACTGGCTCGAGCATCTGAACCGACAGACCAAGCACACCACCATGGCGGCTCCCAGCATGAAACCCCTCACGGTTCCCTGCCACACACTCCCATCTCATCCTCTGACGCCGTCAAGACATGCAGAAAGCCGAGGCCTGACAGTTGCTCCTGCCTACCATACCTTACCACACCCCTCCTCTCACGGGGCCCCTCACAGCACCATGATGTGGGGCCCCCTCGAACCCCCGGAAACCCAGAAGCCCTGGAGCCTGAGTTGCTTGCGTCCAGCACCTCCGCTCAGGCCCTCAGCTGCTCTCTGCTATAAAGAGGACCTCAGTAAAAGCCCCAAAACTATGAAAAAGCTGCTGCCCAAGAGGAAGCCAGAGAGGAAGCCGTCTGATGAGGAGTTTGCACTGAGGAAGAGTACTGTAGCTTTGGAGGAAGATGCTCAGATCCTGAAAGTGATCGAGGCCTACTGCACGAGTGCCAAAACCAGACAGACTCTGAACTCAACATGGCAAGGCACTGATCTCATGCATAATCACGTTTTGGATCAATCCAGCGTGGACTCTCTGGGCCGCCGTAGCAGTATCTCAAGGCCCGAAGCCACCTCGGACCTCTCAGAGGACTCTGACTATGACAGTATATGGACGGCCCACAGTTACAGGATGGGCTCTGTTTCCCGTAAGAGCTCCTACATCTCCCACCAAATGATAGTTCCTGGGGAGGAGAAGTTCAGTGTGGACGAGTTGAAGAGTAATGGTCAGACCCTTCCGGAGAAGAGCCTTGTGGATGTTGTTTATGCTCTGAGAGATGAGGTACAAGAACTTAAACAGGACTATAAAAAAGTGAAGAAATCCCTGGAAGAAGAACAGAGAGCCCGGAAAGATCTGGAGCGGATAGttagaaaaatgttaaagaatatAAACGATCCTACTTGGGATGAGACCAATTTATGATATCAACTAATTTCCTTGCCTTActagtttttgttcttttacgTTAGTGGTTGAAATTACCTGGAAGTTCAAACAGAACTTGTTCAAATGATCATGTTCTCTCACATTGAAACCACTTTTGATGTTTGTGGGTATGTAGTAACGTAATGTTACACATTTGACCTTCTATGGCTCATTCTAATGTTTAAACACTACAATATGCCTATTTTAGTGCATCCACACCAagcagattttcattttgatttggtCACTAATTCCCAGCTGAACAATCATGATCTTACCTGCTTGTTTAAAGGCGTAGCTGAATCTCGTTGGGTGGCATGAGTGTAACCTGTGAACTTCCCTGACAGCTTCCCTGCTCATCTTTCACCTAACGTTAAGGTATTTAGAAAGACAGACAGTACCTCAGTCTACACATCCTAGTACTGTTTTGAGTGTCCTGTTTTTTATATTACCTTTGTCATTACAAAGGATCAAGagaatatcatattttaatgttaagtttaatttttaaatccattttattCAGATGCTTTCTGATTTAAGGTGTTGAATCTGTGAATATTTCCATATGGTACTGGGAACTTTCTCAatccatttaatttgtgtttacaaATCACTCAAATGTTGATACTTAATCATTAAATCAACAGACTGAGTGTGTACAAGCAGCAAATGTCACGCTAAATGTTGAATGCGGGACATGGCGCATGGTGCTTATATGTCAGTATGTTTAGTACATGTTTTAGGTGCCATTGTAATTCAAGCTGTGACAGGAATTCATTATTATGATTCCCAGGATTATTTTTTGAATCATGCAAGTTATGTCTGTATACATTTCAGTGTCACTTAATTAGTAATACCAAAACAAAAGCCAAACTCTTATTTATGGACTTTACTGACTGTGACTTATTACTGTACTTGACATTTATTCCTATAGCTTACACAACACCAATAGCCTCATCAGAATTCATGtgggatatttatttttagcgttCTTTACCTCAACTCCACGTTACTGTAAATTCATCCTGTAAATAAAGACAgttgtttatttgc

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104075 lncRNA downstream 35903 14363039 ~ 14372674 (-) False LOC122351495
TU104049 lncRNA downstream 161249 14244287 ~ 14247328 (-) True G70332
XR_006251857.1 lncRNA downstream 219576 14173817 ~ 14189001 (-) True LOC122352120
TU104012 lncRNA downstream 483741 13924616 ~ 13924836 (-) True G70309
TU104011 lncRNA downstream 484473 13923749 ~ 13924104 (-) True G70308
TU104117 lncRNA upstream 50528 14477332 ~ 14562992 (-) True G70382
TU104132 lncRNA upstream 163054 14589858 ~ 14590275 (-) True G70393
TU104140 lncRNA upstream 167459 14594263 ~ 14595342 (-) True G70396
TU104139 lncRNA upstream 167620 14594424 ~ 14595342 (-) False G70396
TU104213 lncRNA upstream 489996 14916800 ~ 14918840 (-) False G70438
XM_043248573.1 mRNA downstream 35903 14359646 ~ 14372674 (-) True LOC122351495
XM_043249474.1 mRNA downstream 67954 14338698 ~ 14340623 (-) True sox1a
XM_043249542.1 mRNA downstream 102293 14290849 ~ 14306284 (-) False rev1
XM_043249541.1 mRNA downstream 102293 14290849 ~ 14306284 (-) True rev1
XM_043249471.1 mRNA downstream 118349 14287287 ~ 14290228 (-) True txndc9
XM_043249755.1 mRNA upstream 60005 14486809 ~ 14492701 (-) False gja3
XM_043249757.1 mRNA upstream 60005 14486809 ~ 14492677 (-) False gja3
XM_043249756.1 mRNA upstream 60005 14486809 ~ 14492676 (-) False gja3
XM_043249754.1 mRNA upstream 60005 14486809 ~ 14492676 (-) True gja3
XM_043248078.1 mRNA upstream 66625 14493429 ~ 14496095 (-) True gjb8
TU104031 other downstream 154801 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 468709 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 595250 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 912932 13473140 ~ 13495645 (-) False gypc
TU104362 other upstream 876299 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 963045 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1344617 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2390336 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 2390336 16817140 ~ 16823775 (-) True G70986

Expression Profile