RNA id: XM_043249741.1


Basic Information

Item Value
RNA id XM_043249741.1
length 5005
RNA type mRNA
GC content 0.45
exon number 30
gene id mcf2lb
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10462995 ~ 10479085 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGttgttgcagttgtttttgttgttatttttattccaaatgATATAATGTGGCAAAAGAAGTATAACATTTGTATAAATTCTTAAGATCCTGTTGTTTAGTTACAGTAATACAAGCTCTAATAGTTATTTTTTCTTATGATATTCCTGTTTGATTAGAGCTATTTATTGTGACTTGGATTATATGTTCTTGTGCTTTATCTTTCTtttagtttgactgtttttgccCACAGAGACTTCCAAAGAAACGTGTATTTACATTTCTATGTCTCCGAAAGGGAGAGGAAGGGAGCTAGAGAGATTTAGCAGACTAAAAagactttttcttcttttaaatgttatctgTTGGTTTGAATGGCTTCTGACTGACTTGGTCTGAATTCAGCTCTTATCTTTCTCTCCTCAGCTAGATCAGATCTCACTCAGATTCCTCTTGTACCAGAGAGAAACcgaccaaacacacacacacacacacagagtttcaTTCATCTGCCAGTGTGATGGGGGAAGGGGCTCCTGGGGGGCGGCAGACTCTTTTTGGGGTGATTGTGctgacacagacagacatagagagTGCAAACAAAGGGAGTACAGTTCTTTACAGTCAGTGATCAGTCTGTTATCAGTTATAGAAATGTAGCAGGTGAAGGGAACCTGTGTATGTGCGTCAGGGGACCAATCCATTCCAGGAAGTCAGTGTGAAGGATGGaaatgaggagagagagagagggagagacgagagaaagagagagagaaaacaggaaGTCATTAACTGGTGCACCTGTCTCAGGTAGCTCATTCTTGGGTCGCTGCTTACGGTGACAAGACGACCAGGGAGTTAGTAAGATATTAGACAACAAGTGAGAGCAAAGCAGAGGGATGGATGTACAGAATGAAGGGAAAACAGTTTGCATTTCTCTAGCAGAGGCTGAGAAATATTACCGCTTTTCCAGACGTTGCCACTGGCTCCAAAatGAGATCATGCAGAAGGAGTCTAGTCCTCTCTACGCTGCTGACATCATCACTGAGCTCAAGAGACAGTTTGCGTTCCTGTctgGGGGAAGAGGACAGGACGGGAGCCCTATTATTATCTTTCCAGAGTTCCCTTCGTTTTGTGAAATTGGTGACCAGGATTTTCGCAATGTCCTTACGTACCTGACAAGTATTCCCAGTCTGAGTGCAGCGGGTGTGGGCTTCATCGTAGTGATTGACCGGCGTAGAGATCGATGGACGTGTTTAAAGGGGACATTACTGCGCATCTCTGGCTGGTTTCCAGGTAATCTTCGGCTTGTTCTGGTGCTGAGACCCAGTGCTATCCTGCAGCGAACTCTGTCTGATGTGTTCTTCAAACTTCACAAAGACGACTTTAAAGTGCCAgTTATAATGCTAAGCTCACTGGCCGATCTGCACTCTTATATTGAGCGGAGTCAACTGACACAAGAGCTGGGTGGCTCTCAATACTACTGTCACAAGACCTGGATTTCTCATCGCACAGATCTTGAAAGCTTTGCTGCTTTAGTGAAGAGGATGGCTGAGAGACTGCAAGTGTTCGGCAGGGAGCTGGCAGAAACGGAGCTCCCCAACAACCTCCTAACAGCCAGCAATCTGCTCCATGCACAAACCAGCAGAAAAGACGGTTTCAAGGAAGAGATGGCAGGAGCTCTTAGCCAAGGACGCAATCTCTTGGAGAACATCAGGGAACCGGTCCGCAGAGATCCGGACAGCAGTCTAAACCCTGATCAACTGGAGAACCTTGCTACAGTGCACAGGCTGTTATCCCAGTTAAACGAGAGCTCCACGGCGTTTGATGAGTTCTGGATTCAgcatgaaaataaactgaatcaGTCTTTGAAACTCTGCCAGTTCGAGCACAACTTTCAACAGTTGCAAACGGAGCTGGAGCAGACGACAGATGCACTGAATTGTTTCTCAGACGTTGGAATAAGCTCTTCCCAAACAGAACACCTCCTTCAAGAGCTGACCAATCATGAGAAGAAGGCCTGTGAAGTGCTTGACAGAGTAAGGTCTGTGGTTGCTGAGGGACAgcatttgattgacagctctcaGAATGTTGACAACACTGTTGCGGTGAAATGCAGTGAGCTACAGAGAGTCAGGGAGAATCTCAACCAAGAGCTCAAAGACAAGAGGACCATGCTGACGCAGGCTATGGAGCTACACAGAAGATTGGAAATGGTGTGTAAATGGTGTGATGATGGGATTTACATGCTAGCGTCACAGCCTCTTGACAAGTGCCAGTCACAGGAGGGGGCGGAGTCAGCACTGTCAGAGCTGGAGTGTTACCTGGAGACAGCCAATGAGAAACAGCAGTGGGAGATCAGCACAGTTTGGCTGGAATATGAGAACATACTGAACAATGAGCTCAGGGAACAAGTAAAGCGTGCATTTGAGAAGAAAGCCTCACTACAGGAGATGTTTGAGAGGAGGAGGGTTAGTCTGAAGAAACTAGCAGCCAAACAAACACGACCAGTCCAACCTGTGGCCCCACGACCAGAGTCACTCTCATCTCCtgCTCACAGGGAACATGAGAACATCTGTATTAGTGAGGACTCAGACAGCAGGGTGTCTTGTAAACAAGTAAACTCTGATCAAGTTGACAGGAGCAGTCGCAATTCTTCTGTATCTGAGGAGGAGGAAACCCTGGCTGTGCTGCGCAGACATGTTATGAACGAGCTACTGGAAACAGAAAGAGCATATGTGGAAGAGCTTATGTGTGTTTTGCAGGGATATGCTGCGGAGATGGACAACCCCTCCATGGCTCCTCTCATCCCTGCAGCCCTGCAGAACAAAAAGGATGTGTTATTTGGGAACATGCAGGAAATTTATAATTTCCACAAAAGAATATTCCTCAAAGAGCTGGAAACGTACACTGATTGCCCTGAGCTTGTGGGACGCTGCTTTCTGGACTGGATGGGGGAGCTGCAGATTTATGAGAAATACTGTCACAACAAGCCTCGTTCTGAGAGCCTCTGGAGGCAGTGCTCAGACTGTGCCTTCTTCCAgGAGTGTCAGAAGAAACTTGAGCACAAACTCGGACTGGACTCATACTTACTGAAGCCTGTTCAGAGGATCACTAAATATCAACTCCTGCTGAAGgagaTGATTAAGTACAGTAAAGGCTGTGAGGGCTCAGTGGAGCTGCAGGCAGCTCTTTCGTCCATACTGGGTATTCTGAAGGCTGTAAATGACTCAATGCACCTCATAGCCATCACAGGATATGagGGTAACCTTGGAGACCTGGGTCGCCTGCTGATGCAGGGGTCATTCAGTGTGTGGGCGGAGCATAAGAGAGGTCACGTGAAGGTGATGGAGCTTGCCAGGTTTAAGCCCATGCAGAGACACCTGTTCCTGCACGAGAAAGCTCTGCTCTTCTgcaagagaagagaggagagcgGTGAGGGATACGAGAAAGCTCCCTCATACAGCTTCAAACAGGAGCTCAGCATGGCTGCTATTGGAATAACAGAGCATGCTAAAGGGGACAGCAAGAAGTTTGAGATCTGGTCCAGTTCAAGAGATGAGGTCTACACAGTACAGGCCGTGTCTGAGGAGGTTAAGACCATCTGGGTAACAGAAATCCGGAAACTTCTAACAGGACAGCTAGAGGCCTGCAAAGAGGCAAGTCAACAGAGGGCACCTGAGCAGTTCTCCTCAGATGGCAGCTCAACTAACAGACTGGTGAGAAATGAACGTAGCAACCTCAGGAATGGAGGAGTGGAGAAACCAAAGGCAGACGAGGAAAGAGACAAAGAACTTGAGAACATTCTAGAGCCCAGAACAACAGGGAGAGCAAAGGGGTCTTCGTTCAGTTTTGAGACAAAACCAAAACGACAGGATATCCGGAGTGACCCTACACCTCTAGGGCCACACCCTAACATGGGCGGAGTCAGGTGGTTCAGTACATCAAGCCTGTTTCAAAATCGTAGGAGAGGTACACATACTGAGTACACACGTTGGACTAAAGGATCTCTCTCGCTGGATGCCTCTGTGGAGCATGATGGATACTTTAGTGCAGAGGAGCAGGTGACCTCTGACCCAGAAGAGGAGAAGGAAGATAAAATGTGTGCAGATGAGCTGCAGTCTGCAAGGATAGAGGAAGAAATCCAGTGTCCTGAAGAGACGGAGGATCCTGAGAAATGAGAGTTGAGTGTGAATGCGTGTGTATTGCCATCAGTGCACAGCAAATGCATAACTCCTGAAAATAGGGACATGACAAATATATGAACCATTAACTTTGAAGATTTGcatactcttaaaaataaagctttctgGTAGAGGTTTAGGAACATGTGGAGAAAACTGTCCGTTAGGATTCACTTTCATCTCAATGGCAGTGATACAACAGGCTTTTTTGTCAGAATATGCAGCTGATTTTAAACGAAAATTTTTTAGAACCGATCGTCTACCAGCAGGGGTCACACTAACCAGCCACAAAACAAAGAGTTAGTGCCAAAAAAGGTGccctttttattctttaaatctATAAGAAACTATTCACCAACTGGCAAACCTGTAATGCAATGGAAAATTGAAATGGACAGTGACTGTTGTTAAGTGAGTTTGTTGcaagaagctttatttttaagagtgtggcCTTAGAACGCACCAGTATAATGTGCTTTACAGAGACACCCAAGCCAGCTCTTTACACGCCGTGTCATAGTATGCTGTGATTACATGTTTCATATCCCTTAAAACTTAGTACTTATTTCTGTCACGGTAATGATGTCTATATTGGGATATGGCATGTCTATTGTCATTTCCTGTGAACTCCAGTGTGAAAGCATGTGATATATCATTGTGTACTGTACAATGCAGGAAACTAGGACCGACCTATGTGTAAAACAAGCATATCATATATGCAGATGTTGTTTCTTAAAGTGACTGTGATCACCCTGTGCCATTTGTGTGTACAATATGTTTACAAatcaatattgttttatatatatatatacatataaaaataaaaccatagtTGACTAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102406 lncRNA downstream 16228 10445277 ~ 10446767 (-) True G69231
TU102394 lncRNA downstream 18354 10444293 ~ 10444641 (-) True G69228
TU102379 lncRNA downstream 36530 10426227 ~ 10426465 (-) True G69223
XR_006251782.1 lncRNA downstream 199548 10253933 ~ 10263447 (-) True LOC122351639
TU102286 lncRNA downstream 220783 10173936 ~ 10242212 (-) False G69157
TU102549 lncRNA upstream 360768 10837512 ~ 10844040 (-) True G69346
XR_006251830.1 lncRNA upstream 373079 10849823 ~ 10908594 (-) False LOC122352018
TU102556 lncRNA upstream 373079 10849823 ~ 10891473 (-) False LOC122352018
XR_006251829.1 lncRNA upstream 406911 10883655 ~ 10908594 (-) True LOC122352018
XR_006251756.1 lncRNA upstream 453736 10930480 ~ 10946744 (-) False LOC122351427
XM_043249371.1 mRNA downstream 473 10446980 ~ 10462522 (-) True LOC122351939
XM_043249367.1 mRNA downstream 8859 10447383 ~ 10454136 (-) False LOC122351938
XM_043249366.1 mRNA downstream 8860 10447383 ~ 10454135 (-) False LOC122351938
XM_043249365.1 mRNA downstream 8860 10447383 ~ 10454135 (-) False LOC122351938
XM_043249368.1 mRNA downstream 8860 10447383 ~ 10454135 (-) True LOC122351938
XM_043249142.1 mRNA upstream 10953 10487697 ~ 10504466 (-) False rnf17
XM_043249141.1 mRNA upstream 10953 10487697 ~ 10504466 (-) True rnf17
XM_043249146.1 mRNA upstream 38528 10515272 ~ 10519457 (-) True fdx1
XM_043248809.1 mRNA upstream 54909 10531653 ~ 10558579 (-) True uggt2
XM_043248811.1 mRNA upstream 54909 10531653 ~ 10556760 (-) False uggt2
XR_006251819.1 other downstream 21123 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other downstream 21123 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other downstream 21123 10433507 ~ 10441872 (-) True trim13
TU102057 other downstream 552817 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 2121980 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251803.1 other upstream 38528 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 203414 10680158 ~ 10686627 (-) False mrasa
TU102802 other upstream 1020266 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 1690247 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1945685 12422429 ~ 12423446 (-) True G69650

Expression Profile