RNA id: XM_043249750.1



Basic Information


Item Value
RNA id XM_043249750.1
length 5911
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC122352171
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6501409 ~ 6599198 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGTCTCTCCTGTGCCCGGCTCCTTACACACAGTTACACGCTGCATACTAATAAACTTCAGCCTGAACTGGATGAACGAGACATACAAATGTCGTTTCATCTCTGTCACACGCTGATTCTCCTTCACGCAACATGTTGCGATATCCTTTTCCTCTCGTCTTTGCGCATTTAAAGGACATTACGCACCGCCAAAACGATGCCATTTAACGCCACAGCGTCTTTAAACGTCCACACTGCGTCTTTTATTCTGCTCGGAGCTCGTAGAAAGGATCGCTTTTGACGGGAACGTGACGGGATGCTGAAGATGAGCGGACTATGAATACGGACAAGAGGAAGGACAAGGGGGCGAACGGCTTTGAAATCTAAACGCGTACGGggaaatgtgcatttattatgggTGATCTCTCATATTGAAACGTCCagtgagtgtgcgtgcgtgcgtgtgtgtatgtgtgtgtgtgtgtgtgtgagagagtgcgggtgcgcgcgcgcgcgtatATCCATCGCCTGTAGTCTGTAGATCTGTGTTACTGCGCCAGGATGGAGATGACGCAAATGACCCAGCTCCCCAAAAAGTGTTTCAAGACGAACATGGCGGCAACTTAACACAGGACccaagatgatgatgatgatgatgaacagCAGAGAAGATCGAATGCAATCCGCCCAGATAGGGAAAGAGCAGCTCGTTCAGCGTCTCGCCTTCCCTTGAGGAGATACGGGAACAGAGGAGGCATGTTGTCACACAGAAAGCGCTTTTTCTCCGGGGAGCCATGCGGAATAACGGAGATATGACCGCGCGCGGCTTCATCTAGCCCAGAGAGTCGGACACAGCTGCCGGGAGCGCTGTTGAACGggaagaaaacatttcaaatcaatgcattttGTGGCAGAGGAGCCGTCGCGGTGGAGTCGGCTAGTGCTGCTCTTTCCTGAAATATGACCAGGGGTGCTTGGACGTGTCGGCAGCAAGATGACGGCTTAAAAATCTGCTTCGCACCCCGAGAGGACGAAAAGCCATTATTCACCGATTCGGAAAGGGCCCAGAGATGGCGACTGTCCTTAGCCTCTCTTTTGTTTATCACCGTTTTGCTCTCTGATCATCTGTGGTTCTGCGCCGAGGCGAAACTGACGAGGACGCGAGACAAACGGCTGGAGCACACGAACCATATACTTTCATCCAGCCATCAGAGAGAGCAGAGTCTTATTTTTATAGGCAATTCTACCAAACCTCTGTGGAGACTTGAAACTTGTCATCCTGACAGCCTCTCCAAAAACTGCTTGACTTTTGACGAGGCGGAAGCCGTGTGCTCGGGCCTCTCCGAGTGGAACCTGAGCgatttctatctttctttttgtaACTCCTACTCGCTTTTGGATTTGTTTTACGGGTTTACGAGTCCGGACAATTTGACCTGTAGCCTGGACATGGCTGATGCGTCGGGATGCAGCCAGTGCGTCCAGGCTTACCAACGCTACGACCGACGAGCTCAGGAGAAATACCGAGAGTTTGAGCTTTTGGTTCAGAAATATGAAACGGATGTATATTCGGTGCGGACGTGTATGGAAGAGTGCACGACTGTCTACAAACACTGGCTCTGTGCCCAGTTCTTCCACACCACACAGATGCACTGCAGCAACAGGATCCCCTGCAGGAAGTACTGCCTGGAGGTCCAGCAGAGGTGTCCCTTCATATTGCCTGACAATGATGAGCTCATCTACGGAGGAAGCCCCAGTTTTATATGCACAGGGCTCCAAGAGGACAACCCCTCAGACGCAGAGACAGAGTGCTGCGATGTCCGATGGGACAGCAGGGCGGACAACAGCTCCAAAGGCACTCTCAAAAGAACTCACCCGTCGTGTCAGCACGGGACATCCCTGACCTCGTCAGCGGCCTCTAGACTGTGCAACAGCAGACTCAAACTCTGCTTGCTGGTCCTCGTCCTCCTTCATACTGTTGCCACTCTCACAGCATCCCACAATCCCACCGGGTTCAACCTCACCTCCAGCTCCTCCAACGAGGAATGACGGAATAGCCACTCGGTTACAGTGGCGATTCCAGCGACGTGACGGACCGTGGGCAACTTGCTGGGACCTCTGATACAGAGACTGTGGACATGCAATCAAAACAAACCAAGCAAACTGACGAAGCTAAACAAACACTGGACGAATCCAATCAAGCAACAAGAACAAGGGACAACACCGTAGCCTTTGTTGAAAGAGACTTCTAGGGGGCGGAGTTCTCTCGCACCATGTTTTTTACACTGTGTCTATGGTTTGGATTTCTGTTGCACTAGATGACTACAGGATCTAATTCacgtttcttttttgtttcatttgggTCTTTGTGCAGGAAGGATTGGAAGAGACGGATGAGTTAAATGTACAGTATCCAAGTGAATATTCAAGACTGAGCGCGTGTCTATGTGAGCGAATGAACGAgagcgtgtgcatgtgtgcctGTGCTTGCATCCGTGTGTCCACTTAGATGTTCTTCTCGTTTCTCTTCGTAATCACAAACTCTCTGAATGCTGCTCTATTCATTACGAGGGTTTCTATTGTCGTTTATCCGCTGACAAATCTGCCTAGACAAATACCAAGAcacccaaaaaaaaacccaggtTCAAACTCTCCCGTTAAGATCCTGTAACCTTATTAAGGTAGCCTGATATTTCTGTTGTTGgtatgatgtcatttcctgtgagGTCAGGTCAGTAGCTTTGGGGGTCTGGGTACATTAATGTCGCTTATTCACGTAAGTGCTCGACTGAAAGGTCTAGGTATCCAGACTTCTGTTTGTTCCCTCGGTCTGCGAAAAGACGTCCACAAATCTGTTTTTAGCTCCATtcgtgttttatatattatagtaagATATTATATTCTCTACCCTATATTCTGTAATTGCATGTTAGAACCAGTTTAGACAATGCTGCtaaagttttaaagaaataaacccAAACGATCGGAAAACAAGAGGAACTCTCGCTCCGAGTACCATCCAAATTGCTATCTGGCAGCATGAacccagccaatcagagcttACCAGACAAATTACCCCAATCGCACAGAGAGGATCCATCGTTCTTTATTACAGTAAAGGGCTTACCCATCATCCACACGCAATCAAACACTCCTGCATGTAGAGATTCACGTGGCATGAATAACTCAGTGAAAACAATGTTAATTTGTTGCAAACCTTGAGATAGTCATGTCGACAGGAAGTTGAGGAGCTCCAGATAGAAGAGCGAAGGCCCGTTTCAGGTGGCTGGGCTGAAGAAACCGGTTCGTTGTGTTAAGAAGGGGATAAGTTAAGGGctgatgtattattttatgttatttttttctacaggTATGCTCTAATGAGGATGTGTCACtgtgacacaaacacaaaacaaagccTTGAGTTTAACTAAGTTCTCTAGACAGCCTCAGTGCGAGCCTGTTGAAATAGCAGTCCTCGCACCCGTGTTTCCATCTCATAGGACATGACTAATAGCGGTTAATGTTAGGTACGCATACATATGTCATATATCGGGCACGGCTAGCTTTGAGGCTAGGTAAGCTaactgaaaaaagaagaagtgtTTTGTAGCCATATTTCAATTGTGTAAAGCAGGCTAACATAGCGCATGTCATACGCACtcatttcatgtaattttattcCTTTCCTGTACATATCTGTAGATTGTCTGCATTAAGGTGCGGTCACATTTACGTTGTGCAGTCAGTTAGCCGAGTCTGGAATCGCGCATGAAGAGAAACTTTTTTCCAAATGCAAAATTTGTGTCAGATTCAGGTTTGATAACATTTGAGTGTAAGTTCGTAGTCAATTTCGCATCGCTTTCAGATTTCACAACTTTGGATGTGCAAATCCATCGCAAAATTTCGTATCGAATTTCGAAACATCGCAATTCATCGCATTTACCAGTATTCAGCTGCCTATATTGGAAATTCGCTTAAGTTTGCCAATGTGACCAAGCCTTTAAACTACATTggaaaaaagctgatttttttctcaatgcGTATTATCATCACATGCAATACCATTAAACTAAAGGCAAATTTAATAACTTGGATTTTAAGAGAACAAATCAATCCATTTGCCCTTTTGCTGTTTAAACTACCATTAGCGGTGACCTTTTGAGGTGTCAGAAGCACAaagcgtttttttgttttctgaaattgACTGCTGATGCAGTTCAGttcagctgatttaaaaaaagcatttaaccCGAACGCCCAAATGCTGGGAGAGAAACTACTTTTATTCCACTGTTTTTAAATTTCagaattttcaaataaaaatagtcaaacagCTAATTCTTGGCTGTGCAGGGTTTTTGAATTTGGGCAAGCTGAGGTTTATCAAACATCTGataataatgacttttaataTCCCTACCTATAAATCTCTGACTTACTGCCTGTAGGCCCATCTTGGCATTTCATTAAACCAATATGTTACCAGAAACACCGTAACTAGTTCTACAGGTACACAGTACTATGCATGATATGGAATTTTGACCATATGGCAAGGCCCATTTGAGATGTATAAGGGCAGTCCGGCTTGCTGTGCTGAGGACTTTGCTAATGAATAATTAGAGGGGAGTACTGAGAGATACAGTATACCCTCTCGAGAGCTTATTAGTTGGTTTATAACCCTGGACATTCAGCTCGGACCACCTGCTCTGGAATAGCAGGCAGATCAGAAATGATTCCCTCTGTTCATCTCCAAACAAAACTAATTCTGTCTCTCCAGCTGGGCCTGACGGTGAAGGAAAAGATGAGTTAGAGAGAGATGGGCTAATGACAGCAACATATTATTCATTTGCTCTGAAGTTCTGGATGTTTGTTACAGCAAGAcgagcatgcacacacaccgtaatacacacatgcatacatgcttACCCTTTGTATATATTTGGCGACGCTCTACAAGTCAGGAAGGATTCGAGTTGCCTCATTTTCAACACTCATGTCAAAAAAGTCATTCGGTTTGCCTGGTATAAATTTGGACTAAAGCATTGAATCGGTCACCAAACGTACTTCGAGCGCCGCCATTCACAACAGTGCTGACTAAAACGTATACCTAAACTGAGAGCAGCGTCGTGGTTGCTCAGATTTGTCACATTTGTAAAcatgtttctctgtgtttgttGGGATTCAATCACCATACAGTTTGTCTCAGCGACCAACGAGATTGAATGTAACAGATGCCTGCTAATATCGCTAAACACCACCAAACCTACTATAAGATGTATTTTATGCTTGCACATGTTTTATGGTCATTTCCAAGTACTGATCCAGTTGTGTAAGTAGTATTCCACACTGCGTAATCACTTAGCAAGCAGAAATACTTTCTTTTCTGAATCCTGTGGACCTATGCAGCCCTCGACCTcagttgtttttctgttgtaaATACGTTACGAGAATGCTAAACaatgtgtgtctctgtttgATTTGGAGGTTTCCTTGTGTTCTGAGTTGGTGTCCTTTTTTAAATCCTCTTTTGTAAGTGTCAGAGATCATTGGTTGGTTTGTGCTGAGATGGATACTGAGAGCGGAGTGGTTTCATCACAAGAACTGTCCTCTTGGTCACAACCTCGGCACCTGAAGGCTGTGATGCTGTTTGTGATGGTATGTGCAAAGCAATGACTTTAAGAAAATATGAGAAAGGTTTAAAGGCATATAGAGATAACATTATGACTATGactactggaaaaaaaaaataatattatatactaccggtatattgtaatattatagaTGATTTAGTTCAGTAacctatttaatttttttacaagcaactttgatgaaataatttataaaacaatCTCACAAGTTATGATCTTTTCGAAGGTATGATTATACTGCTAAAATGATTAAAGTtgtgttctgatgaaaaaacaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU100892 lncRNA downstream 259807 6241322 ~ 6241602 (-) True G68189
XR_006251731.1 lncRNA downstream 358727 6117851 ~ 6142682 (-) True LOC122351301
TU100773 lncRNA downstream 453813 6045115 ~ 6047596 (-) True G68120
TU100695 lncRNA downstream 695082 5805940 ~ 5806327 (-) True G68082
TU100657 lncRNA downstream 765626 5735337 ~ 5735783 (-) True G68055
TU100973 lncRNA upstream 80897 6680095 ~ 6683011 (-) True G68265
TU100974 lncRNA upstream 98488 6697686 ~ 6697893 (-) True G68266
TU100979 lncRNA upstream 116798 6715996 ~ 6718143 (-) True G68270
TU101056 lncRNA upstream 175876 6775074 ~ 6776415 (-) False LOC122351577
XR_006251776.1 lncRNA upstream 176088 6775286 ~ 6776974 (-) True LOC122351577
XM_043248918.1 mRNA downstream 3205 6492609 ~ 6498204 (-) True abhd13
XM_043248919.1 mRNA downstream 9053 6487238 ~ 6492356 (-) True tnfsf13b
XM_043248920.1 mRNA downstream 9067 6487238 ~ 6492342 (-) False tnfsf13b
XM_043249183.1 mRNA downstream 23863 6319090 ~ 6477546 (-) False myo16
XM_043248124.1 mRNA upstream 87020 6686218 ~ 6708208 (-) True LOC122351204
XM_043249753.1 mRNA upstream 120556 6719754 ~ 6726798 (-) True si:ch73-390b10.2
XM_043248737.1 mRNA upstream 208131 6807329 ~ 6832254 (-) True tmtops2b
XM_043249722.1 mRNA upstream 284290 6883488 ~ 6888374 (-) True ecrg4a
XM_043249721.1 mRNA upstream 284290 6883488 ~ 6888101 (-) False ecrg4a
TU100887 other downstream 240340 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 401526 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 457484 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 578589 5919757 ~ 5922820 (-) False LOC122351463
XR_006251815.1 other downstream 1131820 5349955 ~ 5369589 (-) False LOC122351925
TU101110 other upstream 471787 7070985 ~ 7148620 (-) False LOC122351350
TU101496 other upstream 1415251 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 1479938 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1741745 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 3308990 9908188 ~ 9910178 (-) True LOC122351483

Expression Profile