RNA id: XR_006251861.1


Basic Information

Item Value
RNA id XR_006251861.1
length 2115
RNA type transcript
GC content 0.51
exon number 11
gene id LOC122352174
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3913638 ~ 3922878 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGCGGGTTTCTTCGGCGGCCGTGTTGTTCACGTGGGTCGCTGTAGGGATGATATTTTAACCGTACGCGTCTAAACGTCAACACAGCCGCCGGCGGGCTAGACGCCTCGCAGTTAACGACGCACGTTAGACTTATTACCGCGAGTATGGACGAGTCTGGCCGAGCCTCCTCTTATCTGGACGAGCCACCCAACAGCCGGCTGTTCCTCGTCACCAGCAAGTCCATCACGGAGGAGACCATAAGAGAGCATTTCGCGGCTTTCGGGGAGATTCAGGACATTTGGGTGGTGAAAGACAAGCAGACGAAAGAGTCGAAAGGGGTGTCGTTCGTCAAGTTCGCCAAGTCCTCGCAAGCCTGCGCCGCGATGGAGGAGATGCACGGCAGGTGCCTGGCCGAAGGGACCAAGCCGATAAAAGTCTTCATCGCTCAGTCCAGATCTTCTGGCAGTCACAGAGACGTGGAGGACGAGGAGCTCACCAGAATATTTGTCATGATCCCCAAATCCTTCACCGAGGAAGATCTAAAAGACACATTTAAGGGATATGGGGATATAGAGTATGCTATTATTATAAGGAATAAGACCACAGGTGAAAGTAAAGGTCTGGGTTACGTCAGGTTTCACAAACCTTCACAAGCCGCCAAAGCCATCGAAAAATGTGACAAGACTTTTAGAGCTATTTTAGCTGAGCCCAGGACCAAAAACGCTTCAGCAGACAATGACTATTTCAGCAACCCTAGAGCGGAGCACCCCGGGAACGACGCAGCCTCGAACTCGTACACCTTCGCACACGAGTCCAGCAGCTACTCCACGGGGGACACGTGGAGCTCGGACATCATCACCCGGTGCCTGCTGGTGTCGTCCCGGGCCGCGGTCACTCAGGAGCAGATCTGCGCTCTGTTTGACCTGATCCCGGGGATGGACTTCTGTGAGATGCAGAGAGATCAGTACGGCTTCAGCAAAGGTCAGGTGGTGGTGCGCTACAATAACCTGGGCTCAGCGGTTTATGCGAAAGAGAAGCTGAATGGGTTTGAGTATCCGCCCGGCAACCGTCTCTCGGTATCTTACATCGATGACGGGGAGGACAGAACGAGTCCCGTGGGGAAGATGGCGATGCAGCTCGTGGCGGCTCAGATGATGTCTATGGTGTGGAACGGCCCTTCTGGCGCACAGCTAATGAAGACTAGCACGGGCTATACAGCGCCCCCTGTACCACAGAAAGCACGTGTGCAGACAGATGTAGCTCTCCCATCTCTAAAGAAACTGGTGGCGTCTGACAGCGTGGTGAAGGAGAGGCTGTTTGTCATCTTCAACCCCTCACCTCTGCCTGTGGATGTGCTGGAGGACGTGTTCTGTCGTTTCGGTTCCCTGATGGAGGTTTACTTGGTTCCGGGCCGGAATGTGGGATATATAAAGTATGCAGAGCGGAAAGCCGCTCACGACGCCATAGCCCTGCTGCACGGTAAAGTGATTAACGGCGTCAAGATGAAGGTGATGCTGGCAGACCCGCCCAAAGAGGAATCGCACAAACGCCAGAGAACTtactgacctttgaccttacGACAGGCTCAGAGGTTTAGATGACATGACGCATGACCCCGACATGACAGGACGGCTATTTATGATGACACGACCTCATAACGACGGACACTGACTGCCGTTTCAGtgctttaaagtgtttttactttctccctttttgttttcttgtttgcaATAGAGACACTTGACCACTTGATGTTTTCATCTTGGTTAAATCTGATTGTAGGGTCTGCAAAGGTGTGGAACGACAGTAGGTCGAGTAAAAGACGACAGAATCGTTACATGTCAAGTAAAAGCGACAGGCAAAGCTTCATGCATGAATTCAGTGATGTGGAAGTACCTGCTCTTTCCATGCTCTCCTTCTCAGACAGGCATCGGACTGAGTTCTTGACTGAAGACGCTCCTTGAACACAACATTGGTCAGGCATGAGACACaaacaaaaagggaaaaaatgacTACTGGGGCCACTGATTAAGGGGATGCTTACATATGAATACAATGCTAAAAGATATTAAGAACACATGTACTATGAgttgtattatttcattaaaattcatagatttttttattataccc

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K25081 RBM45; RNA-binding protein 45

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99748 lncRNA upstream 83866 3828991 ~ 3829772 (+) False G67448
TU99751 lncRNA upstream 84021 3828823 ~ 3829617 (+) True G67448
XR_006251706.1 lncRNA upstream 267024 3642961 ~ 3646614 (+) True LOC122351161
TU99699 lncRNA upstream 275556 3601318 ~ 3638082 (+) False G67418
TU99708 lncRNA upstream 294332 3607394 ~ 3619306 (+) False LOC122351601
TU99905 lncRNA downstream 23656 3946534 ~ 4031820 (+) True G67562
TU99916 lncRNA downstream 61291 3984169 ~ 3985934 (+) False cdca7a
TU99977 lncRNA downstream 115718 4038596 ~ 4038822 (+) True G67604
TU99979 lncRNA downstream 141759 4064637 ~ 4064961 (+) True G67606
TU100026 lncRNA downstream 233778 4156656 ~ 4157963 (+) True G67637
XM_043248310.1 mRNA upstream 2818 3906741 ~ 3910820 (+) True LOC122351330
XM_043248311.1 mRNA upstream 3592 3906741 ~ 3910046 (+) False LOC122351330
XM_043248107.1 mRNA upstream 146101 3760833 ~ 3767537 (+) True stx19
XM_043248460.1 mRNA upstream 154423 3754816 ~ 3759215 (+) True rsph1
XM_043248457.1 mRNA upstream 161015 3744006 ~ 3752623 (+) True fbxl3a
XM_043248084.1 mRNA downstream 3013 3925891 ~ 3945608 (+) True LOC122351193
XM_043248533.1 mRNA downstream 25140 3948018 ~ 3981211 (+) False zak
XM_043248532.1 mRNA downstream 25142 3948020 ~ 3981211 (+) True zak
XM_043248534.1 mRNA downstream 58468 3981346 ~ 3985962 (+) True cdca7a
XM_043248594.1 mRNA downstream 186772 4109650 ~ 4112225 (+) True sp9
TU99551 other upstream 717117 3194795 ~ 3196521 (+) False LOC122351419
XR_006251792.1 other upstream 2184243 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 2778649 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 3053482 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 3108629 797133 ~ 805009 (+) True G66727
TU99912 other downstream 25158 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 58649 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 197649 4120527 ~ 4125450 (+) False scrn3
TU100018 other downstream 218176 4141054 ~ 4222171 (+) True G67630
TU100016 other downstream 294172 4217050 ~ 4220395 (+) False G67630

Expression Profile