RNA id: XM_043249753.1


Basic Information

Item Value
RNA id XM_043249753.1
length 2259
RNA type mRNA
GC content 0.44
exon number 14
gene id si:ch73-390b10.2
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6719754 ~ 6726798 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCATGACGTCAGCAGCTTGACAGCTCAGCCGGACACTTGTTCTgttcaatttttgtttttctgcgTTAGCAGAGCCTTTTTAACACAATGAGCCGAGGGTGCGTTtgacatttactgtataaaccCCATACTACACGCTACGCCATGTCTTTCTTCGTGGATTCGGTGATTATGTTCACTTCTCAGGTGCTGTTTTTTGGGTTCGGGTGGCTGTTTTTCATGAGGCAGCTGTTTAAGGATTATGAGGTTCGGCAGTATGTTGTGCAGGTGGTCTTTTCCATCACCTTTGCCTTCTCTTGCACTATGTTTGAGCTTATCATCTTCGAGATCCTCGGTGTGTTAAACAGCACgtcCAGATATTTCCACTGGAAGCTGAATTTGTATGTAATATTACTGGTTCTAATATTTGTGGTGCCTTTCTACATTGGCTATTTTGTGGTCAGCAATATACGATTATTGCAGAGACAAAGGTTGCTTTTTTCATGTGTGGTCTGGTTCACGTTTATGTATTTCTTCTGGAAGCTGGGTGATCCTTTCCCTATACTTAGTCCAAAGCACGGCATTCTGTCCATAGAGCAGCTGATCAGTCGTGTGGGGGTCATTGGGGTCACACTGATGGCTCTTCTCTCTGGCTTTGGTGCTGTGAACTGTCCTTATACATACATGTCGTATTTCCTGAGAAATGTGACAGACAGCGATATCCTGGCCCTGGAGAGAAGACTTCTTCAGACTATGGACATGATTGTcagtaaaaagaaaagGATTGCCATGACAAGAAGGCAGATGTACCAGCGTGGAGAAGAGCAGAATAAACAGACGGGATTCTGGGGGATGATTAAGAGCGTGACCTCCTCACCATCAGGCAGTGAGAATCTTTCTCTGATCCAGCAGGAAGTGGATGCTCTGGAGGAGCTCAGTAGACAGCTTTTCCTGGAGACCGTGGACCTGCAAGCCACCAAGGAACGGATAGAAtactcaaaaacatttcaagggAAATACTTCAACTTCTTAGGGTATTTCTTCTCCATTTATTGTGTGTGGAAAATCTTCATGGCCACTATAAACATAGTGTTTGACCGTGTGGGGAAGACCGATCCAGTGACCAGAGGAATCGAGATCACAGTCAACTATCTCGGCATTCAGTTTGATGTCAAGTTCTGGTCTCAGCACATTTCCTTTATCCTGGTGGGAATCATCATAGTCACGTCCATACGAGGCCTTTTAATCACACTCACCAAGTTTTTCTACGCCATCTCCAGCAGCAAGTCCTCCAATGTCATTGTGCTCGTCCTGGCTCAGATCATgGGCATGTATTTTGTGTCCTCTGTGCTCCTGATGCGGATGAGCATGCCATTAGAGTACCGCACCATAGTGACAGAGGTGCTGGGAGAGCTGCAGTTCAACTTCTACCACCGCTGGTTTGACGTGATCTTCCTGGTCAGCGCTCTCTCCAGCATCCTCTTCCTCTACCTGGCCCATAAACAGGCACCCGAGAAGCACATGACCCTGTGACCTCACAAGTGACCtcgtcagagagagagagagactgaaatgTCTTTCTTTCGTCTCTACTTTTAGAAGGACTTTTATGCCTCTGCCGTGTAATGAGTATTATCGGGTCTGTATTTCCTGAATCAGGAGGGCCCCGGAAACACTGTTTGActttggtcaaaaaaaaaaaaattataataacgtCGATTTGCTGTATCATTTAAATAGACTCATGTTAATGGAGGGGACAAAACAGTATACaatgtgggtgttttttttcataaaatgcatataatttccCATACCAGGTGTCATTATGTTTACCACTGTAAGCGAACGAGCTAAATGCTCTCACTAGTTTGTTCACCATGAAATCAGTTACTCTTGAGCCGTCTTTTATCATTAATAAGCATCAGATCTATATCTCAGCACACCCAGTTATGTTACAGTGGACTGTTGGactcttgtttttctttcaggcCTGTTAATCGTTACTATCATTCCACCTCTCATTAAGAACTGCAATGATTCACGTGTGGATGCTGCCTTGAGTGACAGTCGTAATCTTCTGCTGAAATCACATCAGCTGGAAAAGAACATGCGTACTTTGGGCTTTTGTATGATCGTTTTTTTTGTGGGTGTTAGACAGACAGGTGCCGGTGATTTACTGAAAAGGCAATGCCTGCGTGCCAGAGATGTAACCGCCTTGGATTTCTCGTCAAATGCGGGAAAGCTCCGATTTCCATTAAAAGGCCTTTTCAAACTTT

Function

GO: NA

KEGG:

id description
K22193 GPR89, GPHR; golgi pH regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100979 lncRNA downstream 1611 6715996 ~ 6718143 (-) True G68270
TU100974 lncRNA downstream 21861 6697686 ~ 6697893 (-) True G68266
TU100973 lncRNA downstream 36743 6680095 ~ 6683011 (-) True G68265
TU100892 lncRNA downstream 478152 6241322 ~ 6241602 (-) True G68189
XR_006251731.1 lncRNA downstream 577072 6117851 ~ 6142682 (-) True LOC122351301
TU101056 lncRNA upstream 48276 6775074 ~ 6776415 (-) False LOC122351577
XR_006251776.1 lncRNA upstream 48488 6775286 ~ 6776974 (-) True LOC122351577
TU101058 lncRNA upstream 66604 6793402 ~ 6794375 (-) True G68333
TU101051 lncRNA upstream 83050 6809848 ~ 6813015 (-) True G68328
TU101086 lncRNA upstream 155787 6882585 ~ 6882976 (-) True G68357
XM_043248124.1 mRNA downstream 11546 6686218 ~ 6708208 (-) True LOC122351204
XM_043249750.1 mRNA downstream 120556 6501409 ~ 6599198 (-) True LOC122352171
XM_043248918.1 mRNA downstream 221550 6492609 ~ 6498204 (-) True abhd13
XM_043248919.1 mRNA downstream 227398 6487238 ~ 6492356 (-) True tnfsf13b
XM_043248920.1 mRNA downstream 227412 6487238 ~ 6492342 (-) False tnfsf13b
XM_043248737.1 mRNA upstream 80531 6807329 ~ 6832254 (-) True tmtops2b
XM_043249722.1 mRNA upstream 156690 6883488 ~ 6888374 (-) True ecrg4a
XM_043249721.1 mRNA upstream 156690 6883488 ~ 6888101 (-) False ecrg4a
XM_043249561.1 mRNA upstream 169679 6896477 ~ 6943442 (-) False nck2a
XM_043249562.1 mRNA upstream 169679 6896477 ~ 6943442 (-) True nck2a
TU100887 other downstream 458685 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 619871 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 675829 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 796934 5919757 ~ 5922820 (-) False LOC122351463
XR_006251815.1 other downstream 1350165 5349955 ~ 5369589 (-) False LOC122351925
TU101110 other upstream 344187 7070985 ~ 7148620 (-) False LOC122351350
TU101496 other upstream 1287651 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 1352338 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1614145 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 3181390 9908188 ~ 9910178 (-) True LOC122351483

Expression Profile