RNA id: XM_043249757.1


Basic Information

Item Value
RNA id XM_043249757.1
length 4106
RNA type mRNA
GC content 0.43
exon number 2
gene id gja3
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14486809 ~ 14492701 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGTGCGAGCTGACTGCCGATGACTTTCTGAACGCAGCACTCTTGCATGACCACTCAAAGTGACAGTAGCGATGGCTGGGAACGGGAGACAGCTGCGCTTGGTGAGACCCCGTCTCCACACTCGGTTTGCCATGAAAAACTAGGTCTTCTACGAGAGTTTGACCTCGGGTCTATGTGTGAAGAACTTTTGTGAATGAATAAGTTGGCCGGCCACTTTCAAAAGAGTTTGGTAAGCTGGCAGTGCTGCCAGGATTTGGGAACGGGGGGAGCGGGGAGGGCTCCTGCTACCTTTGGGAGGTCTGTATGCTTTCAACGCACTCAAACTGTGGCACCAGTGGCCGCTGGATATTGCTTTCTTTAGATAAGTTTGCCTACTTCAGTCAAGGCTAGAAATCGTGAAGCATGGCTGACTGGAGCTTTCTTGGACGGCTCTTGGAGAATGCACAGGAACACTCGACCGTGATCGGCAAAGTCTGGCTGACAGTACTCTTCATTTTTAGGATTCTGGTGTTGGGAGCGGCAGCCGAGGAGGTCTGGGGCGACGAGCAGTCGGACTTCACCTGCAACACGCAACAACCCGGTTGCGAGAATGTCTGCTATGACGAGGCCTTCCCCATCTCCCACATCCGCTTCTGGGTGCTCCAAATCATCTTCGTGTCCACACCGACGCTCATCTACCTGGGCCATGTCCTGCACATCGTTCGAATGGAAGAGAAGCGGAAAGAGCGCGAGGAGGAGCTGCGAAAGGCCAGTCGGCTCCAGGATGAGAAAGAACTCCTGTATAGAAACGGAGGGGGAGGGGAGTCCGGTGGACGGGGTGGGGGCGGCGGCGGCAAAAAGGAGAAGCCGCCAATCAGAGACGAGCATGGCAAAATCCGCATTAGAGGTGCCTTGTTGCGCACCTACGTGTTCAACATCATTTTCAAGACCCTGTTTGAAGTGGGGTTCATTTTAGGTCAGTATTTCCTCTATGGTTTCCAGTTGAGGCCCCTGTATAAGTGTGCGCGGTGGCCCTGCCCCAACACAGTGGACTGCTTCATTTCCCGGCCCACGGAAAAGACCATCTTCATCATATTTATGCTTGTGGTGGCTTGCGTGTCCCTTTTGCTGAATTTGTTAGAAATCTATCACCTCGGATGGAAGAAGGTCAAACAGGGCATGACCAACAAGTTTGCCCCAGACCGCGAGTCGCTGCCTGACGCGGACGAAGCGGAGGCCGAGTCTTCTAGAACTGCGCCTGCCACCATCAGCTACCCGCCAGACTACACGGAAGTGGCAGTGGTTGGCGGAGGGTTCCTCCAGCCTGTGTCGGTGCCCTCGACGGCCGAGTTCAAGATGGACCCTCTGCGCGAGGAGCTGGAGGAGTCCTCGCCATTCTACATCAGCAACAACAACCACAGGCTGGCTGCCGAGCAGAACTGGGCCAACCTGGCCACCGAGCAGCAGACTCGGGAGATGAACGCCGCCTCCCCCTCcccttcctcctcctcgtctCGCTCCTCTGATAACGGGCGGCAATCCAAAGAAGCCGCTCAGCACGCCGGCGTCCCCACCTCTACTAGCGGTGGTTCGACCGCCGGCCCGGAGGAGGGGCATGTCACCACCACGGTGGAGATGCATGAGCCGCCCGTCGTTTTCACTGATGCTCGACGACTGAGCAGGGCTAGTAAAGCCAGCAGCGCGAGAGCGAGGCCCAGTGATTTAGCGGTTTAGTGGCTCTCCACTGCAAAGTGCAGGTTTTTgtggacaaaaacacacacaaaaaaatacaccaaaaaacAAGCGGAAGAAAGGGGCAGATTGCTggaacaaaaactttaattccattcattatttactccattttgcaattaaaaattataaagagTTTAACCATCTCTTATGGCTTATGAAAGCATCTGTTGTAGATTATGTTACACGGAATCTCAATGATTTAATGACATCAGCGAATGTCACTTGAATTAGTCTTGTGACGAGGCCTTTCTCTGTATAATCATGCAAAGTTGTTGATAGTAATAGCATTAAATGTGCAAGACCTGACAGCACTATGAGGTTTTTCAAAACAAGCATAGATAGAGAAGAAGAGGCTTATGATCAGTTCAGGTCAGAAATAGTCATTATCAGAAACAGACAAAACCAGATCCAGCATACGACCCTGGATGTTAGTAGAGCCATTCACTCACTGTATAGGATCAACAGATTCGATCAGACTAAAAACAAATTCTTAGAAAGAGAGTCAGATCTAcagcaaatatgaatatttaagtcCCCAAATATCATCAGATCatcatattttgtaaaaagCTCACTTAGAAGTTTCTAGACATAGtcttgtgtaatatttttgaaGACTTGAATAGGATATGAGACAAATGGGACAAAGAGAGTAGCTGAAGTAAATGAAGAAAGTTGTCATGAACacccaattaaaaaaaaaagtgtaataaaaatgtaaaactttttattgTTCCAGCATCTGTCTCTACATTTCCCCActgtaaagagaaaaaaaaacaaaaaaaaaaaaaaaaccacattgCCTGATAAAAGTGGCAAAGTTTAATGCATCACAGAGAAATGTCATCCATACACTGAAAAATGAGCATATAACTGAGGCAAGTGAAATATTTAGATAACTGTTGTACTGCTGAATGGTGCAGAGTTTTAATTCATATAGCTTGTGTATTCTCTGGACCaagtttctatttttctttttttcaatccCATGATCTGAAGTTCACATCCTGCTCCTCTGTTGGATTTGAGAGTTTTGATATATGACCATGTCCAATCTTGGCATCAGGAATACATGATCACTTTTGAAGTAGTTAATCAGATGAGGGGAATACTAACTCTCATTACATGTGACATTTGAAATCCGTAttggtttttatttcaaaaagtttgagcattttctaaaaatgtaagcaATTGATTGAGAATGAGTACAAAAACAGTTATCGAAAGCATTGCTTTTCTGTAGTCAGTTCGTGGTTGCCAAAAAGTAGTTACTTCAAAATGGACATAAAAAGATGCTTATGTGTCTTATGCTGATATGGAGTTTATTCccccttttttctctctttttttggtcCAGTTTCAGGTTACTGTGAGGCCCTCATTTTCACTGACTACTACTGCTGTTGTATAAAACATGCCTTCTGTAAACATAACAACTCACATCAACTTGACAGcacaacatgattttttttgtttggagaCCTTTACAAAACTGTTGTTGAGACCCATTCAAACACAATGTACATTGCTTTTATTATCAGGTCTATATTTCTGCAATCTATTTAAAGAGATAGACAGCACTGAAATAGAAATGGTACATTGCTTCATCACACAGAGTTTGTGCTTAGGACAGtattacttttgcttttatcaGATCACAGTATTTACAGATGTacgttatttattttctgccgTTTTAATgtatccaaaaatgaaagtgtgttattttgtcattttttggttcttaaagtttacattttagtaaatagTTGAAGATTTGCACATTTAGGCAAAAGACACTGTTCAATAATTCTTACATTGATAGAAAGGAGGAAATATTTTTGATCCTTAAAGGAAAATGTCTTAATGGTAAAAGTCGTTGTGTTGATGGCAGTATTATTCCACTTAAATAacatcaaatgtaatttataaaacaGCACTTGTAGAGTATAAGAAATATACACGTTtcccatgttttattttaggactGTTGTGGTGGCCTGAAAGGACCGCAGAAAATTTGAACTTTGTGCATTATAGCATTTCATCCATTCTGAATTTGAATTGGCCAGCCAGCCAGCTCTTTCCTATCTCGATCCGTTTGTAGTGTACTTAGTTGCAGCCCATTATCTCAGATAACACTCATTTCTTGAACTTCTTGAACTGATTTTCTCTAGCAGAGCTGATTATTCTGACCAATCAGGGAAATGAACCACCTACATATGCTCAGAACAGCAGCCTGTTTCAATGCTGTCTTAAGAGAAGTGCCTTGTGTATTCAATTTTATAAGAACAAGTTgatgtaaatgttcatttaccTCAAATGTTTACAAAGCTGTTactaaataaactttttgtacCATAAA

Function

GO:

id name namespace
GO:0010644 cell communication by electrical coupling biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0003161 cardiac conduction system development biological_process
GO:0055085 transmembrane transport biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0048050 post-embryonic eye morphogenesis biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005922 connexin complex cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104075 lncRNA downstream 114135 14363039 ~ 14372674 (-) False LOC122351495
TU104049 lncRNA downstream 239481 14244287 ~ 14247328 (-) True G70332
XR_006251857.1 lncRNA downstream 297808 14173817 ~ 14189001 (-) True LOC122352120
TU104012 lncRNA downstream 561973 13924616 ~ 13924836 (-) True G70309
TU104011 lncRNA downstream 562705 13923749 ~ 13924104 (-) True G70308
TU104132 lncRNA upstream 97181 14589858 ~ 14590275 (-) True G70393
TU104140 lncRNA upstream 101586 14594263 ~ 14595342 (-) True G70396
TU104139 lncRNA upstream 101747 14594424 ~ 14595342 (-) False G70396
TU104213 lncRNA upstream 424123 14916800 ~ 14918840 (-) False G70438
TU104214 lncRNA upstream 424123 14916800 ~ 14918840 (-) True G70438
XM_043249736.1 mRNA downstream 60003 14408577 ~ 14426806 (-) True arhgef7a
XM_043249737.1 mRNA downstream 60004 14408577 ~ 14426805 (-) False arhgef7a
XM_043249732.1 mRNA downstream 60004 14408577 ~ 14426805 (-) False arhgef7a
XM_043249733.1 mRNA downstream 60005 14408577 ~ 14426804 (-) False arhgef7a
XM_043249738.1 mRNA downstream 60005 14408577 ~ 14426804 (-) False arhgef7a
XM_043248078.1 mRNA upstream 752 14493429 ~ 14496095 (-) True gjb8
XM_043248400.1 mRNA upstream 4109 14496786 ~ 14506954 (-) False cryl1
XM_043248401.1 mRNA upstream 4109 14496786 ~ 14506947 (-) True cryl1
XM_043248402.1 mRNA upstream 26251 14518928 ~ 14521341 (-) True eef1akmt1
XM_043248391.1 mRNA upstream 28721 14521398 ~ 14551453 (-) True xpo4
TU104031 other downstream 233033 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 546941 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 673482 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 991164 13473140 ~ 13495645 (-) False gypc
TU104362 other upstream 810426 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 897172 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1278744 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2324463 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 2324463 16817140 ~ 16823775 (-) True G70986

Expression Profile