RNA id: XR_006251862.1


Basic Information

Item Value
RNA id XR_006251862.1
length 2110
RNA type transcript
GC content 0.51
exon number 11
gene id rbm45
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4709053 ~ 4717233 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGCGGGTTTCTTCGGCGGCCGTGTTGTTCACGTGGGTCGCTGTAGGGATGATATTTTAACCGTACGCGTCTAAACGTCAACACAGCCGCCGGCGGGCTAGACGCCTCGCAGTTAACGACGCACGTTAGACTTATTACCGCGAGTATGGACGAGTCTGGCCGAGCCTCCTCTTATCTGGACGAGCCACCCAACAGCCGGCTGTTCCTCGTCACCAGCAAGTCCATCACGGAGGAGACCATAAGAGAGCATTTCGCGGCTTTCGGGGAGATTCAGGACATTTGGGTGGTGAAAGACAAGCAGACGAAAGAGTCGAAAGGGGTGTCGTTCGTCAAGTTCGCCAAGTCCTCGCAAGCCTGCGCCGCGATGGAGGAGATGCACGGCAGGTGCCTGGCCGAAGGGACCAAGCCGATAAAAGTCTTCATCGCTCAGTCCAGATCTTCTGGCAGTCACAGAGACGTGGAGGACGAGGAGCTCACCAGAATATTTGTCATGATCCCCAAATCCTTCACCGAGGAAGATCTAAAAGACACATTTAAGGGATATGGGGATATAGAGTATGCTATTATTATAAGGAATAAGACCACAGGTGAAAGTAAAGGTCTGGGTTACGTCAGGTTTCACAAACCTTCACAAGCCGCCAAAGCCATCGAAAAATGTGACAAGACTTTTAGAGCTATTTTAGCTGAGCCCAGGACCAAAAACGCTTCAGCAGACAATGACTATTTCAGCAACCCTAGAGCGGAGCACCCCGGGAACGACGCAGCCTCGAACTCGTACACCTTCGCACACGAGTCCAGCAGCTACTCCACGGGGGACACGTGGAGCTCGGACATCATCACCCGGTGCCTGCTGGTGTCGTCCCGGGCCGCGGTCACTCAGGAGCAGATCTGCGCTCTGTTTGACCTGATCCCGGGGATGGACTTCTGTGAGATGCAGAGAGATCAGTACGGCTTCAGCAAAGGTCAGGTGGTGGTGCGCTACAATAACCTGGGCTCAGCGGTTTATGCGAAAGAGAAGCTGAATGGGTTTGAGTATCCGCCCGGCAACCGTCTCTCGGTGTCTTACATCGATGACGGGGAGGACAGAACGAGTCCCGTGGGGAAGATGGCGATGCAGCTCGTGGCGGCTCAGATGATGTCTATGGTGTGGAACGGCCCTTCTGGCGCACAGCTAATGAAGACTAGCACGGGCTATACAGCGCCCCCTGTACCACAGAAAGCACGTGTGCAGACAGATGTAGCTCTCCCATCTCTAAAGAAACTGGTGGCGTCTGACAGCGTGGTGAAGGAGAGGCTGTTTGTCATCTTCAACCCCTCACCTCTGCCTGTGGATGTGCTGGAGGACGTGTTCtgTCGTTTCGGTTCCCTGATGGAGGTTTACTTGGTTCCGGGCCGGAATGTGGGATATATAAAGTATGCAGAGCGGAAAGCCGCTCACGACGCCATAGCACTGCTGCACGGTAAAGTGATTAACGGCGTCAAGATGAAGGTGATGCTGGCAGACCCGCCCAAAGAGGAATCGCACAAACGCCAGAGAACTtactgacctttgaccttacGACAGGCTCAGAGGTTTAGATGACATGACGCATGACCCCGACATGACAGGACGGCTATTTATGATGACACGACCTCATAACGACGGACACTGACTGCCGTTTCAGtgctttaaagtgtttttactttctccctttttgttttcttgtttgcaATAGAGACACTTGACCACTTGATGTTTTCATCTTGGTTAAATCTGATTGTAGGGTCTGCAAAGGTGTGGAACGACAGTAGGTCGAGTAAAAGACGACAGAATCGTTACATGTCAAGTAAAAGCGACAGGCAAAGCTTCATGCATGAATTCAGTGATGTGGAAGTACCTGCTCTTTCCATGCTCTCCTTCTCAGACAGGCATCGGACTGAGTTCTTGACTGAAGACGCTCCTTGAACACAACATTGGTCAGGCATGAGACACaaacaaaaagggaaaaaatgacTACTGGGGCCACTGATTAAGGGGATGCTTACATATGAATACAATGCTAAAAGATATTAAGAACACATGTACTATGAgttgtattatttcattaaaattcatagatttttttatta

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K25081 RBM45; RNA-binding protein 45

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100192 lncRNA upstream 23872 4677450 ~ 4685181 (+) True G67752
TU100157 lncRNA upstream 133528 4572676 ~ 4575525 (+) False LOC122351246
XR_006251713.1 lncRNA upstream 133617 4572574 ~ 4575436 (+) True LOC122351246
TU100155 lncRNA upstream 133623 4572676 ~ 4575430 (+) False LOC122351246
TU100146 lncRNA upstream 150025 4523286 ~ 4559028 (+) False G67717
TU100248 lncRNA downstream 61124 4778357 ~ 4780535 (+) True G67769
TU100273 lncRNA downstream 106193 4823426 ~ 4823776 (+) True G67782
TU100322 lncRNA downstream 152952 4870185 ~ 4870882 (+) True G67812
TU100349 lncRNA downstream 182252 4899485 ~ 4954081 (+) True G67826
TU100348 lncRNA downstream 198026 4915259 ~ 4954081 (+) False G67826
XM_043248346.1 mRNA upstream 2916 4702686 ~ 4706137 (+) True si:ch211-222f23.6
XM_043249604.1 mRNA upstream 98075 4576182 ~ 4610978 (+) True agps
XM_043249762.1 mRNA upstream 153304 4547501 ~ 4555749 (+) True hnrnpa3
XM_043249761.1 mRNA upstream 155876 4547501 ~ 4553177 (+) False hnrnpa3
XM_043249716.1 mRNA upstream 285713 4417288 ~ 4423340 (+) True hoxd3a
XM_043248632.1 mRNA downstream 3322 4720555 ~ 4772214 (+) True osbpl6
XM_043248634.1 mRNA downstream 3322 4720555 ~ 4772214 (+) False osbpl6
XM_043248636.1 mRNA downstream 3322 4720555 ~ 4772214 (+) False osbpl6
XM_043248637.1 mRNA downstream 3322 4720555 ~ 4772214 (+) False osbpl6
XM_043248633.1 mRNA downstream 3322 4720555 ~ 4772214 (+) False osbpl6
TU100144 other upstream 146451 4557143 ~ 4562602 (+) True G67717
TU100101 other upstream 295911 4410876 ~ 4413142 (+) False hoxd4a
TU100018 other upstream 486882 4141054 ~ 4222171 (+) True G67630
TU100016 other upstream 488658 4217050 ~ 4220395 (+) False G67630
XR_006251811.1 other upstream 583603 4120527 ~ 4125450 (+) False scrn3
TU100423 other downstream 298400 5015633 ~ 5018338 (+) True c9h2orf76
TU100453 other downstream 422980 5140213 ~ 5142152 (+) False ndufb3
unassigned_transcript_1318 other downstream 687996 5405229 ~ 5405301 (+) True trnar-ccu_4
unassigned_transcript_1319 other downstream 688670 5405903 ~ 5405975 (+) True trnar-ccu_5
unassigned_transcript_1320 other downstream 690243 5407476 ~ 5407548 (+) True trnar-ccu_6

Expression Profile