RNA id: XR_006251706.1


Basic Information

Item Value
RNA id XR_006251706.1
length 164
lncRNA type inter_gene
GC content 0.61
exon number 2
gene id LOC122351161
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3642961 ~ 3646614 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCGTTGCGGGGGCCCGCTCGGATTGTCGGAGCCGCTACCAGCTTCTTCTCTCAGGGCGAGCACTGGCGGAGCGCTACCGGAGGATTTACACCACCGCGATCAACGACAAAGAGCAGGGGCTCAACCTCGGCAGGGGAAAGAAAGCTTTGAGCAAGAAGAAGCT

Function

GO:

id name namespace
GO:0042068 regulation of pteridine metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0016198 axon choice point recognition biological_process
GO:0016567 protein ubiquitination biological_process
GO:0021986 habenula development biological_process
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99699 lncRNA upstream 4879 3601318 ~ 3638082 (+) False G67418
TU99708 lncRNA upstream 23655 3607394 ~ 3619306 (+) False LOC122351601
XR_006251781.1 lncRNA upstream 33461 3606570 ~ 3609500 (+) True LOC122351601
TU99700 lncRNA upstream 36587 3601318 ~ 3606374 (+) True G67418
XR_006251741.1 lncRNA upstream 50721 3586803 ~ 3592240 (+) False LOC122351351
TU99751 lncRNA downstream 182209 3828823 ~ 3829617 (+) True G67448
TU99748 lncRNA downstream 182377 3828991 ~ 3829772 (+) False G67448
TU99905 lncRNA downstream 299920 3946534 ~ 4031820 (+) True G67562
TU99916 lncRNA downstream 337555 3984169 ~ 3985934 (+) False cdca7a
TU99977 lncRNA downstream 391982 4038596 ~ 4038822 (+) True G67604
XM_043248786.1 mRNA upstream 58270 3507925 ~ 3584691 (+) True vwa8
XM_043248787.1 mRNA upstream 70105 3507925 ~ 3572856 (+) False vwa8
XM_043248472.1 mRNA upstream 258784 3363734 ~ 3384177 (+) True epsti1
XM_043248473.1 mRNA upstream 260157 3363734 ~ 3382804 (+) False epsti1
XM_043248461.1 mRNA upstream 363621 3262607 ~ 3279340 (+) False LOC122351398
XM_043248433.1 mRNA downstream 23948 3670562 ~ 3742739 (+) True mycbp2
XM_043248434.1 mRNA downstream 23948 3670562 ~ 3742739 (+) False mycbp2
XM_043248435.1 mRNA downstream 23948 3670562 ~ 3742739 (+) False mycbp2
XM_043248439.1 mRNA downstream 23948 3670562 ~ 3742739 (+) False mycbp2
XM_043248442.1 mRNA downstream 23948 3670562 ~ 3742739 (+) False mycbp2
TU99551 other upstream 446440 3194795 ~ 3196521 (+) False LOC122351419
XR_006251792.1 other upstream 1913566 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 2507972 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 2782805 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 2837952 797133 ~ 805009 (+) True G66727
XR_006251861.1 other downstream 267024 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 301422 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 334913 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 473913 4120527 ~ 4125450 (+) False scrn3
TU100018 other downstream 494440 4141054 ~ 4222171 (+) True G67630