RNA id: XR_006251710.1


Basic Information

Item Value
RNA id XR_006251710.1
length 2313
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC122351188
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16605367 ~ 16631420 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCTCTCTGTGACTAACAACTAAAATATGGCAGTTTAAAAGAAGTTTCAGTGGTGCTCCAGTTCCATAGGGTTGTGGAACGAGAGAGATGGACAGGTAGAGTTGTCATTTCTTCCAGGTCTCTGCATATCActttctttcgttctttcttttatttcactgGAAAGGTGAcgctgtgaaatattaaacagccGAGTGTCCCTCTGTGGTGTCGGGTTTCCCACAGCTGATGAGAATTCAGGTACTTTCTCCAAGATGGAGAATTAGGGTTTTATGAAGAAGATGAGCAGGGATGAGTCAAAGCAGCATTTCTGAAAGCTGGAACTGgatcaaaaatcttttttaacacattttaatacattatcaCAACAATTATGATAGGGGGACATTTGTATTTGAACTAATGTTAGTATATAAGACATATAAGTCcttaaaaaattcttatttggACTAAAGCTTTAGTTTGCCTATTAAAAATGTCTCgattaaatcttatttaaaagaCAGATTTATCCAGTTGTATTGACTGTTGATTATAATTTGATTCTAAGTAATATCAGTTTGTTGAGACTCTCAAGAGGTTTGTTTTATGTCGTCACGAAAGGCATGCTTATTTGACATTGGTGGACCCGTTTAGAAAACGTTTAGACTGGTTGGTACAGAGCGAATTCTTCACTGAAAGACACTAACGTTCCTCGGTCACATAAGTAGGGGAGTTTCCTGCTCCTAAAGATCGAGGCGTTTTTCACCACGACTGCcggcttttctctctctctcccttcctctctttcgctcccttctttttttctgaatgggTGTCCTCTCTCTAACCTCTCAATTCACAGCAGCATTGAAACAGGACACTACCCTGAACACTGATAGGCTGCGGCTAAATCGCTCAGCCCCTCAACCCGACACTATAAGTACTCTGGCAGTCCGTCTCCAGTGTATGACTGACTGTttagagggagagagggagagatagaaTGGGAGGGGGTGGTAGAGAGTTTAAATTCAGTGACAGTGATAACAATGATATTATTCGTTCTTCGCTGAAACGGGGAAGCACTTTCAGCGTCTACGGCACGCTTCCTCTGTCTCTATCGCTTTAAGAGTGTTACTGATTAGTCACTAAAGAATGCgagtggaaagagagagagaaaagggacAGAGTCAGAAGGGAGAGACAGACTGAGAGCGTTCGTGCCTGGAACTCGTATGGAGAAGACTGATAATGCTGAGCTGAGtagagttttgttttattttccagcagTTCGGAGACGTTAATGGAGCTctcacactgtgtgtgtgtgtgtgtttgcggcTCCTGAAGACGAAGGGGGAAGTCGGGGACCCCGCACATGCAGGCAGCACTCAGCCATCAGGAAATACTCTTTTCACCCAGACAGAGCTTATTCAGACAGGCTCCATCTATTCAGATCATGTGATGCTCCATGTCTTCATTTCAATTTAGGCGCTGGGGACGGCTCAAGTGGACGAGTGCTGCCAGCGGCTTGTTAGGGTGCTCATGAGGTGCTCAGTAGTCAGTGTAGATCCTGTGTTGCAATCAGCAGCTACATCTGGCTACTGGGTCTCTGATGGCATTTTCTGCTTCCTGTTGGCACATTCCTTTCAGATTGTGTGGTATGTTATCACAATGTGTGCCTCATCCTGTCAGAATAGGACTCGCTCTTTCATGGACGTTAAAGAGGGCTCTTGTCACAACACCCCTCTTCGACCAGAGCGATTTGGTAGAGCTTTTGCACTTTTAGCCTAGTTTACTGTgggcttttccttttttattttcttaaataaatttaatcaaGGTGAGTGAACTGTCAAAGTGGAGCTAAAAGTCTCGGGAACCCATTTCAGACGTCTTTGAAAGAAAGGATTGAGACATTGTTCCTTGTTTGACTGCTGAAGATTCAGTTTAAGTGATTAGGTAACAAAGGACAAGGCGACATGTCACATTCTCTTTGTGATTTGCCTGTCACAAGGGGCTGTctttgtgcaaatgtttttgaGTTGTTGAAGGCTGACAAATAATTAGAGTTAAATGCGCAGACATGCTGAATCGCATTGGTTTTGGGGAGCGAAGGATGAATTCTTTTGTGTTGTCGTGAACCTGGCATACAATGTAGATTTCTGTGTGGTACAATCTACAGCTACATTGTCTGCTGGGTTTCAGGCCAGCAGAAAAATCCTGCTCTGCTCAGAAATTGAAAAGGTGAGTCGTTAAGATGTTACGCATGCTTGAAAAAGACTTATTCCTACTATGAGAATACAATAAAAGTACTGAAAGTATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104861 lncRNA downstream 485048 16118282 ~ 16120319 (-) True G70894
XR_006251840.1 lncRNA downstream 651391 15948113 ~ 15953976 (-) True LOC122352066
TU104518 lncRNA downstream 842698 15762383 ~ 15762669 (-) True G70660
TU104479 lncRNA downstream 961091 15642259 ~ 15644276 (-) True G70633
XR_006251775.1 lncRNA downstream 966931 15628883 ~ 15638436 (-) True LOC122351574
TU104958 lncRNA upstream 13462 16630486 ~ 16715102 (-) True G70967
TU104949 lncRNA upstream 95795 16712819 ~ 16713846 (-) False G70962
TU104950 lncRNA upstream 95795 16712819 ~ 16713846 (-) True G70962
TU104957 lncRNA upstream 98498 16715522 ~ 16717084 (-) True G70966
TU104956 lncRNA upstream 102491 16719515 ~ 16720573 (-) True G70965
XM_043248778.1 mRNA downstream 21306 16579731 ~ 16584061 (-) True dipk2b
XM_043248169.1 mRNA downstream 64716 16538368 ~ 16540651 (-) True fundc1
XM_043248411.1 mRNA downstream 67292 16526525 ~ 16538075 (-) True efhc2
XM_043248026.1 mRNA downstream 89923 16509560 ~ 16515444 (-) True LOC122351145
XM_043249228.1 mRNA downstream 100467 16477543 ~ 16504900 (-) False mao
XM_043248032.1 mRNA upstream 77730 16694754 ~ 16698639 (-) False slc35a5
XM_043248031.1 mRNA upstream 77730 16694754 ~ 16698537 (-) True slc35a5
XM_043249387.1 mRNA upstream 103780 16720804 ~ 16744816 (-) False dcaf6
XM_043249386.1 mRNA upstream 103780 16720804 ~ 16744816 (-) False dcaf6
XM_043249385.1 mRNA upstream 103780 16720804 ~ 16744816 (-) False dcaf6
TU104521 other downstream 833503 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 1205930 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 1299392 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 2351591 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 2665499 13938259 ~ 13939868 (-) True G70294
TU104983 other upstream 200116 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 200116 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 618848 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 1952731 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 3103474 19720498 ~ 19721737 (-) False ankar

Expression Profile