RNA id: XR_006251725.1


Basic Information

Item Value
RNA id XR_006251725.1
length 894
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id LOC122351283
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 2083592 ~ 2086178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgactattttgAGTGGAGctaaaatcatttcaaaagcACCATGTAGTCTGCATCCACTGAATGAAATACTAGGTATACAGTTTTTGTTATATCAATCATttgatgcattatatttttgtatgtgacagttttaacaaaaacgtattgtaaaaaaaatggtagcAGGGGAAAAGCAAACATTAATGTCACTGAAAATGTTGAACATGAACCCTAACCCTAAGATTTATTCAGTTAGTAGTCTGTTTTATCTTTGATTCCGGCAGCTGGGACAAGAGCAGTAACCCTGAACCCTGGAATAAACTCAGTCCAAGCTACCAATATAAGTTTGTGGCCATTAACACAGACTACAAAAACCTGAAGAAGGAAGGACCAGACTTCTGAACATTTCACGGTTGTTGCTCAAGTACTTTAATTATGAAGATGCTGATATGCCCTTGCACCTCACTATTCTAAAGTTTttacacaaatgtgtgtgtttttaggaaAAAATGATATCCTCACAAACGCTGATAGACATATTCATTAGCATGAGATGAAAAGCGGAATAAAAACTAGACtagcttttcttttgtttatgcGCATTAGATGTTAAGCTTTCTAGAAATCCCCAAAACTGCAGAGATAACATGACCTCTCTCTAGTGAGCATGAGAAAGGGCGAAAGGAAGACGAGCAGATGTAAACAGAACCTGAACAGCACAGACTCATGGGAAGGAGATCGAGCTCCCTCAGGACTGCTCTTCAGCTGTTTAGAATGACACATGGAGAACAACACACAGATATCTTTGTCTCTCTCACTAGCTCTATATCTGCACTTATTATTGTAACCAACTATCATCATTCATCTTCACGTTTTTTAGTACTGGCAAGGCATACAGACAAACACAGGAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99224 lncRNA upstream 180409 1895482 ~ 1903183 (+) True G67071
TU99225 lncRNA upstream 180409 1895482 ~ 1903183 (+) False G67071
TU99214 lncRNA upstream 218003 1861854 ~ 1865589 (+) True G67064
TU99207 lncRNA upstream 304382 1778914 ~ 1779210 (+) True G67057
TU99198 lncRNA upstream 314004 1769380 ~ 1769588 (+) True G67048
TU99218 lncRNA downstream 104 2086282 ~ 2086805 (+) True G67065
TU99258 lncRNA downstream 45784 2131962 ~ 2132396 (+) True G67097
TU99389 lncRNA downstream 555441 2641619 ~ 2654476 (+) True G67187
XR_006251721.1 lncRNA downstream 831664 2917842 ~ 2924413 (+) False LOC122351269
TU99463 lncRNA downstream 831685 2917863 ~ 2924636 (+) True LOC122351269
XM_043248603.1 mRNA upstream 217985 1861809 ~ 1865607 (+) True ndufa4l2a
XM_043248938.1 mRNA upstream 347272 1713813 ~ 1736320 (+) False bpifcl
XM_043248941.1 mRNA upstream 347272 1713813 ~ 1736320 (+) False bpifcl
XM_043248939.1 mRNA upstream 347272 1713828 ~ 1736320 (+) True bpifcl
XM_043248940.1 mRNA upstream 356062 1713812 ~ 1727530 (+) False bpifcl
XM_043248592.1 mRNA downstream 59327 2145505 ~ 2201714 (+) True LOC122351505
XM_043248142.1 mRNA downstream 168379 2254557 ~ 2258615 (+) True LOC122351218
XM_043248238.1 mRNA downstream 408303 2494481 ~ 2499298 (+) True nr4a2a
XM_043249416.1 mRNA downstream 812985 2899163 ~ 2908133 (+) True pou1f1
XM_043248229.1 mRNA downstream 840188 2926366 ~ 2930420 (+) True vgll3
XR_006251792.1 other upstream 354197 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 948603 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 1223436 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 1278583 797133 ~ 805009 (+) True G66727
TU98627 other upstream 1621563 459574 ~ 462029 (+) True G66657
TU99551 other downstream 1108617 3194795 ~ 3196521 (+) False LOC122351419
XR_006251861.1 other downstream 1827460 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 1861858 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 1895349 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 2034349 4120527 ~ 4125450 (+) False scrn3

Expression Profile