RNA id: XR_006251746.1


Basic Information

Item Value
RNA id XR_006251746.1
length 3002
lncRNA type intronic
GC content 0.43
exon number 3
gene id LOC122351376
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 1671371 ~ 1674598 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATATGCATTGGCAATCTGTAACTATGCTACTAGATATCCGGAGGTATATCCTTAGCACTCAGTTCAGGTTAAACATATTGTAACATGTTTGATAAATATGGTATCCAGAGTTGGTGTTCCTTCTGAAATTGTTACAGACCAGGGGACACATTTTATGGCCAATCTGATGAAACCTCTGTACCAGCAATTAGGCATTAGAGGAATTAGAACAACACCATTTCATCCTCAAATCGATGGTCTGGTAGAACGTTTTAatggcatattttaaaaaacatgcttAAGAAATTTGTTGACAAGTCTGGGAGGGATTGGGACAAATGGcttgcttttcttctttttgcatATAGGGAGGTCCCTCAGTGCTCAATTGCATTTTCTCCTTTTGAGCTTTTGTTTGGCAGGCAAGTTCATTGTCCCCTGGACGTGCTCAAAGAGGCTTGGACAGCAGAAAAACCACCCCAGTGCAGTATCACCTCTTACATCTTGCAGATGCGGGATAAGATGGAGAACTACAGAACTATGGCCCCTAAAGAATATACTTGCGGCCCAACATAGACAAAAAAATGGTATGATGCACATGCCCGTGAAAGGGACTTGAAACCCGGGCAGAAAGTTCTGCTATTTTTACCCTCAGGTAGGAGTAAATTGTTGGCCAAGTGGCAGGGCCCGTATGTGGTTACTCAAAAACTGAGATGTGTAATTTATGAGATGTTATGCCCTGAAAGAAAGTAGCCAAAACAGGTCTTACATGCTAATCTCTTGAGGGAATTCAAAGGGAAGGTGTCGGTGTCAGATTATGAAGATCTTCAAGAAAGGAAAGACCAGGTGATGATGGTGAGGGCCATagtggaggaggaagaggaaactGATATGGAGCCAGTTTGGGCATCCTAGGCGACTTAcagcactttttgtttttggataactgtggcacaGTAAAGATTATCTTTTTCTTGAACATTGTTGGAGTCCTTGCCATCTTTCTTTACGGCCTGTAGCACTGCATTGACCATCTTACCACATCAAACCTGAGTTAAATTTTTCTAGCCACACCCAGGCTTGATTACTGCCAAACTTGTTCGCAATCaagaaaatgcttaaaaagGACAAAGTGAAGTTGACCAAAAAATTATCAAAAGCTACTTATCATGTTAAGATCCAAAGAAATTCAAgaacaaatgagaaagaaagtaaCTGTGATCTATCAGTCTGGAAAAGGTTATAAAGCcatttctaaagctttgggACTACCACAATGAGAGCCATCCACAAATGGATCAATAGTGAACCTTTCCAGGAGTGGCCAGCTGACCAAAATTACCCCAAGAGCACAGTGACGACTCTTCCAAGATATCACAAAAGACCCCACAACAACTTCCAAAGAACTGTAGGTCTCACATGCCTCAGTTAAGTTCAGCAATGGCTTGCATAGCAGAGTTACAAGACGAAAACCGCTGCTgagcaaaaagaacataaaggcTCATCTTAGAAAATACTCTGTGGACTAATGAGACAAAAGTTAAACTTTTTGGAAGGTGTGTGCCCCAGCAAGTCAGCCTCTGACTTgctgaaggaaaaacaaaatgaaggctttaaagactttttgtctttattacCTAACAAAAGGTACTATGTCAATTTAAGAATATTCAATCAAATTTTGTACTTTAGCAGCCACCAGTGGATGAAATACAAAGACTCTGATGAAGACGTTAGAACCCTGACTTCCCTGATTTCATTCTTCTTTCTATACACTGTTCTTCCTGCATGCAAGCTTGTCATGTCACGGACAAAACCCATGATACTGGACTCCGGGAGACTTTCTTCCTCTGAGCAGCAGAGGAGGCTGACTCTGGGTGTGAGTCTGTATTGTGAAGCTGGTGGGCATATGTGTTTGTCATGCTCCATTTGTCCCAAGAATTCTCTGcTCTCCTTGACCCCAGGTCAGCTGGAAATCCCTGTACCTTCTGCCGCCAGTGTAAATTACCAACCTCCCCAACAGCAACAAACTACCAGGTCCACACGATAACTGTGAAACTCTTGAGTCGACAATAGATCAGACTCAGTGCTGGAACTCTAGTTGGACTGCTACATGTGGAGGAAATTGAACTGCTGATTCTACAGTAGAGGATTCCACTGCAGATGCCAAACCCATTCTCTCTTGGGGCACAGGAGAAGTCTTAAAATGGGAGCCTCTAGCTTACCACCACATCGAGCAACTAAAAGGGGCCAAGATATTCACAAAATTGGACCTCTGCAGCACCTACAACCACATATAAGAATATGTGAGGGGGACGAGTGGAAAGCAGTTTTCGTGACACCCATCGGCCACTGAGTATCTCGTCATGCCCTATGTATTAGTCAACACCTGGTCCGTATTTCAAGATTTCATGCACTAGGTCGTCTGGGAGTTTCTCCACAAGTTCATTCTCGTCTACATCGATGACATCCTGATATACTCCTTGAGTGAGGCAGAACATATCAAAGTATGTTGCTGAGGTCTTAAAGAGGCTACATGAGTATGAaccaaaaaatgtatcttcCATCATACCACTGTGCCGTTCCTTGGGTATACATCTGGGGTATGCAGATGGATGAGGGGAAGGTCAAAGCTATCACTTCCTGGCCAGAACTTTTTCGGATTTGCCAACTTTTACCTTTGGTTCATTCATAATTACAGTACAATCACAAGTCTGCTTAATTCACTGTCCTGGATCCAGGAAGCCACAGAAGTCTTTGCCACTCTTAAGAGAGCTTTCTCCATTGCTCATCCTCTTGTAAATCCAGACCCTGCCCTTCATAGTTGAGGTCGACACATCAACCAATGGAGTAGGAGCAGTCCTATCACAACAGCAGAGGATCCCTCCACGCTTCCATCCATGTGCCTACTTCTTCCAGAAGCTCAGCCTGGCAGAGAAAAGCTATGACATTGCCAACAGAGAGCTGCTAACCATCAAGTTCACCCTGgaggagtggagacactggTCGGAGGGAGCGTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99052 lncRNA upstream 76919 1585935 ~ 1594452 (+) True G66952
TU99030 lncRNA upstream 143971 1525863 ~ 1527400 (+) True G66931
TU98988 lncRNA upstream 392193 1259617 ~ 1279178 (+) False LOC122351665
TU98987 lncRNA upstream 395649 1259617 ~ 1275722 (+) True LOC122351665
XR_006251784.1 lncRNA upstream 408781 1259579 ~ 1262590 (+) False LOC122351665
TU99157 lncRNA downstream 14057 1688655 ~ 1692476 (+) False G67023
TU99158 lncRNA downstream 14057 1688655 ~ 1692476 (+) True G67023
TU99160 lncRNA downstream 14057 1688655 ~ 1692476 (+) False G67023
XR_006251855.1 lncRNA downstream 19126 1693724 ~ 1695529 (+) True LOC122352111
TU99198 lncRNA downstream 94782 1769380 ~ 1769588 (+) True G67048
XM_043248887.1 mRNA upstream 355476 1299556 ~ 1315895 (+) True LOC122351663
XM_043248881.1 mRNA upstream 432348 1231173 ~ 1239023 (+) False LOC122351657
XM_043248880.1 mRNA upstream 432348 1231174 ~ 1239023 (+) True LOC122351657
XM_043248877.1 mRNA upstream 592124 1067017 ~ 1079247 (+) True LOC122351655
XM_043248940.1 mRNA downstream 39214 1713812 ~ 1727530 (+) False bpifcl
XM_043248938.1 mRNA downstream 39215 1713813 ~ 1736320 (+) False bpifcl
XM_043248941.1 mRNA downstream 39215 1713813 ~ 1736320 (+) False bpifcl
XM_043248939.1 mRNA downstream 39230 1713828 ~ 1736320 (+) True bpifcl
XM_043248603.1 mRNA downstream 187211 1861809 ~ 1865607 (+) True ndufa4l2a
TU98836 other upstream 536382 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 811215 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 866362 797133 ~ 805009 (+) True G66727
TU98627 other upstream 1209342 459574 ~ 462029 (+) True G66657
XR_006251792.1 other downstream 39215 1713813 ~ 1729395 (+) False bpifcl
TU99551 other downstream 1520197 3194795 ~ 3196521 (+) False LOC122351419
XR_006251861.1 other downstream 2239040 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 2273438 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 2306929 3981527 ~ 3983582 (+) False G67566

Expression Profile