RNA id: XR_006251749.1


Basic Information

Item Value
RNA id XR_006251749.1
length 3144
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id LOC122351387
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19496912 ~ 19508085 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCtgggagtaaaaaaaaaatctttgcttCAGTCCAAGTTCACCTTCTGTTGACTGCTTGCTCTAGCTTATGATagattaatagaaataatacattatgcACTGCaaattaaacttaataaataattatatattaatcacGTATAAATCATTAGTTACTAAACATAGcagaaatgtactgtatatatgcaaatatgtttcTACAAGAGTTTGTTAAAGGagaatttattattaagaaacatacattttagacacaatattactgtttatgtttgcaccactaataaaaatatatccaaatgctgctgcaaaaagaatcagtgtttttaatgattcaATAATTCGAAAGTCTTAATAAACAAAGCATTCTGACAAACCATTAAGCAGGTggcgttatttatttatttatcggaaataatgttcatattaaaatgtgtatttaattccCCCATAAATATGTGCTCTGAGACTTTAATATGGGATATTATTGCATAGAAAAccctttaaataaattgtatattgcATACCACATTGATAAGTTCGTGCTGTGTATCAAAGCCTGTATGTCCTGTCCGTTTTGATACAGCCAGCATGTTACCCAGCTTTGTCtgataaagttaaataaagtcCCTGTTCTTCCATTTCTCAGGACACACAACATGCTCCCGCAGCTCTCAGAGATGCCTCTGTTGTACTGATGTGTATGGAGGCCAAATCCAATGTCTGGGCTCTGCAGGGTATCAGAGGCTTCCTCCAGTCTTTGTGGAATCATCCCTTTGCAAGAGCAGGCATTTTCCATTGGGTTAAGCTAGAATCCTGTTCTCTCTCGCTTCAAAGTGTTTTCTTGAAAGTGCTGGACACATGTTGTGGTTCCAGTGCTGAGAAGGAAACATGTTCACTGTAAGGCAAGACACTCTGAATAAAGGATTTAAAGAATTCACCTGTACATGTAACACACCataatataatcaataaaatgGTCTCATCACGGTTTGCCAATTAAATATCCAGTCAGAAAGAGACCACAGCAGATCAGTGCAAAAAAATTGTTCAAGCAAGTGACAGAAAAAGAAGAATGATACAAAAACAGTTCATACACTGAccaaaatactaatattacaaaatgaaacacaaaacagttaATTTGTAAGAATCAAACTGTTTCAGTAAAGCAGAATACGAGCAGGTAAATTGGCTTTTACATGAGAGAAAAGTGTTCAGGATTTCCTAATAGGTAAGTGTGCCTTACAGATCGATTGGACTAAATATTCGTAGACAGTCGACAGCTCAACACACGCCATCGGCTGTGTGCAAGAAGGTGAAACAGACTCTAACAATACACAACACAGTGGGTGAACTAGCAGATAGAAACAGTAGTAGATGAAACTGGTTTAAGTAGACGTAAATACGGGGATATGAAAAAACAGCTAGCGCTTCTCAGACCGCacctaaaatacaaatataagaaaacagaaaaagacattttattttaataatagtccCCCATCCCCTTTAAAACCCACACAACAAACTCTTTTCCTCCTAGATGAAACTCATAAACTTCAGCAGACTTTATGGTAAACTAATAACGCTCTCCTAATGGTGAACACATCTTTAGACCGTGACGTACAGCTTAAGGGTGGAAAGGCTAGAGGTGGACAACTCACCAGGAGAAGGAAGCTATATCGGACCACGGAGTATGAGAAGTTTTGAGAAGTCGCGCGCAATGCTAAAATAGGCACCTTTTAAAACCGCGAAGACCAAAGCGCTCCAATTAAAACTCTAAAATCTCCAAATCTTTACATTTGGTTAGTATGGAATGAGCTTCAGTGGaagcatttcttaaaaaatgatccgcttgtgttccacagaaaggATTGTACCTTTTGGGTTTGTAATGACACGAAGGTGGGCAAATAATGactgaatgtttatttttaggagAGCCATTCTTGGGAATTGTGCTCTAAAGCGAACTGTACAAAGTATAGCAAGCAGGGCATAGAGAGATTGCACTCAATCAGTTAGATTCATAAAGCCAGTACCGAAGGTCATTTGTTATGAGTATAATGTATTCAATGTAATCAGCTCCAATTACAGGCCTCCCGGTGGATATGCACAGAAAGCCGTCTAGTCCCTCCCCTGACGACAGGCCTCCTGCTGTCAGCACATTGCCTAACCTGAAAAAAGGAGCGTTTTACTGACAGAAACCACAGGGTACTTTACTAAATGATGGCAGGGGGTCAATCAGACAGTGAGTCCATCCTTCCTCTCCAATAATGGACTATCAGACTGCCTGACCGCCGCAGCTGTAATGGGGCGAGCATACAGAGCGATAATTTATGGAGTCGTAGTTGCGGCTGGAGATGTGATTTTCTTAGTGCAACGGTAGAGTGCATTCAAAGTGATGTTTTGCATGCTGAGGCGGACCCGATGACCTCATTAAAACCTGTCAGAGACAGATCTGATGGAGGAAGGTTACCGTGGATACGGTGACGCAGTCTGCCTCAAAAGGCCCTGTGATTACCGAGTGAAATATAGCCGAGCACCCTTCCCATTCTTCTCCTACAAAGgcacaaaatgaaaatctgtgGAGAAAAAAGGGGGTGAATCTGTGATTAAGGAGAATTTCTCTCTCAAAGATGgccatccaagatataCAGTAGATAAcactgtttcttcatcagaacatgGAGAACATTTGGAGAAGTCATCGTTACGTCACTTCAGTCGatcctctacagtgaatgggtgccatcagaatgagaatcCAAACAGTTGATGAATACATTACAGTTTAGTGCTCCTCCCACATGCTACTTCTAGTAAAGCGTTACGAGGTTTGACATCGACAGTGGAATTCTTcggtatttaaaatgcaaagACTTGCTTAATCAGATAAAGTCATTCCCCCTGATAACATCACATCTGGAGGAGTCCTGACTGCACTGCCAGCCGACACTGAATTGTGAGGCCAGCCAGCAAAAATGAGCCTCTAGATTTGATCTCATACACACCCAGCCTTTGAAGAGATTATGGTAAGTAGAATGTAGTAATACGTTCAACACAATGCAAATCACAATGCCTGGTGCTGGGTATTACATGTGCACTGTGTAATATTCATTAATCTGAAATCGGATGTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251712.1 lncRNA downstream 37812 19443445 ~ 19459100 (-) True LOC122351235
XR_006251824.1 lncRNA downstream 242664 19251637 ~ 19254248 (-) True LOC122351981
TU105862 lncRNA downstream 524010 18911843 ~ 18972902 (-) False LOC122351248
XR_006251715.1 lncRNA downstream 524010 18941516 ~ 18972902 (-) False LOC122351248
XR_006251716.1 lncRNA downstream 524010 18941516 ~ 18972902 (-) True LOC122351248
XR_006251732.1 lncRNA upstream 11655 19519740 ~ 19525590 (-) True LOC122351304
TU105978 lncRNA upstream 29656 19537741 ~ 19543847 (-) True G71587
TU106096 lncRNA upstream 158915 19667000 ~ 19671164 (-) True G71667
XR_006251727.1 lncRNA upstream 166646 19674731 ~ 19681399 (-) True LOC122351289
TU106074 lncRNA upstream 201299 19709384 ~ 19712184 (-) True G71645
XM_043249176.1 mRNA downstream 211689 19259729 ~ 19285223 (-) False ikzf2
XM_043249178.1 mRNA downstream 211703 19259729 ~ 19285209 (-) False ikzf2
XM_043249175.1 mRNA downstream 212878 19259729 ~ 19284034 (-) True ikzf2
XM_043249179.1 mRNA downstream 212885 19259729 ~ 19284027 (-) False ikzf2
XM_043249273.1 mRNA downstream 247737 18980278 ~ 19249175 (-) True LOC122351886
XM_043248417.1 mRNA upstream 38139 19546224 ~ 19568760 (-) False bard1
XM_043248416.1 mRNA upstream 38139 19546224 ~ 19568620 (-) True bard1
XM_043248803.1 mRNA upstream 61083 19569168 ~ 19634801 (-) False abca12
XM_043248802.1 mRNA upstream 61083 19569168 ~ 19634801 (-) False abca12
XM_043248801.1 mRNA upstream 61083 19569168 ~ 19634801 (-) False abca12
XR_006251863.1 other downstream 927030 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 2241421 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 2673137 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 2673218 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 3725048 15771421 ~ 15771864 (-) True G70663
TU106113 other upstream 212413 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 288172 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 373739 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 981079 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 981079 20489164 ~ 20503890 (-) True G71938

Expression Profile