RNA id: XR_006251755.1


Basic Information

Item Value
RNA id XR_006251755.1
length 2551
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC122351427
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10930480 ~ 10946744 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctgtatatacatattaaatatacactgttcacacacatatattatgtaaacattttatttatttatttttattttggatacgattaatcatttgacagctttaatttatatatttttagagctGAGGGATTTTTGTGCCAGATATCTTATGACTGATACTTtgagaaatgaaaaattatgGGATCCAAAACAACACTGACTTTTCTTATATGAATAAAAGCGTGTAAACAagctttgaaatataatttgtgttcTTCAATAGAAATACGTCATAGAGGTGATagcataattttcatttcataattcatcatttttataggttgaactatcactttaaatagTTCAGTGTAGCTCCTTTTTAGTCACatttaactgctttttttttttaaaaatggcttgaCTGTACTTAATTGCTTTGTATCTTGCATAGCTACTATGGACTCATGGTTTAGTTTCTAAGTAGGCACTCAAACACTAGTGTATGTAGAAAAATTGAACGATCATATTTGTATGCATAGAAATTTCAGTCTGTTGCTGTTTGCTTTGACTGTTTgcctgtgtatgtgtttgtgcttgTTTACCAACagatgtttgtgcatgtgtgtgtgtgtgtgtgtgtcagtgttagCGTGTGGGAGCATGTCATCTGGGTACACTgatacacagacacacgcacacacatgcccTGTGTTGGCGCCCTGTGCTTGCAGTCGGATGGCGTTTGAGCTGGGGCCAGGACAAAGCTGTGCACTGGTGGACTGTCACTCCAGCTTAAATCTGCTCCCTGATCAAAGCCCTCCCCCCTCAGAGCTGGTCATCGCCCACCCCCCACCTCCCTTCGCCTCTCTCCTCTTCCCAACCTTGACTCTTGACTCCAAGCCAGACGCTGGGCCACCGCGCCACCACGGACATGCGGCCTGGCACTTTGGAGAAAGAGGGCGAAAGATCGTACTGCGAGATAGACGGGATGCTGATGGTCCCGTTGAGACACGTTCTTTATGAAGTCATAAAAACGAACGCTACGGGCAGACTGTTCATCTATTAGAATGACCTTCTTTTTGATGATCGGCCCTTGTCAGCGGTGATTTTTACTGCCCAGGAGATAGCACTTTCCCATTCAAGTTTGGGCAAGTTTGGGTCTGTATGGAGGTTACTGGGGTCAACAGTGCAGGGATTGGTCTTTCAATAAGGGAGCCATGGCAACAACACACAGCATGTTAGCTGCCAGGTATCGACCTCAATAACTGGTGGTGCACCTTTAAAAGCTGCTGGAGCCCTGGCCCAGGAGCGGCTTAGATCAAAGGAGCAGTCCATCAATATCATCTTGACTGTCAGCCCACAGAGCACCGATATACTCAGGTGGActaaagaaatgaagaaagaatGAGTGACAAATGGGAAACGGATCAAAGAATGCTGTTTTTACATAATAGTGAAAGACAttgcattagtttttttcttaatcCAAGTTATCCAATTTCAAGTTATTTTTGGGTAAATCATAAAGGTCAGTTCAAACAAAACAGTCAAGACTGGATTTAAAGCTCTTGTTGTTTAATCACTAGCATGACCTGCAACCCACCCAGAACATAGGTGTTACACGAATCGGTAAAGATCTCAGGCGGACCACTGCTTCAGGTATCGACCAAATGCTGCTGTTCACATCGATAACCACTGCAGTCCAGCCGAGTGTCTCTGGAGCTGCACAAACGAGGCAGATAAAGAACCGCTTTGCTCATCTAAGCTTGTTTCCTTCGACACACAGCATTTCCCATGCATTACTACTGCTTCTCTGGAACAAAGTTCTTGCATTATGGTTTAAGGTGAAAAATTGATATTTCTAAGGTGTCTGTTACGAAGTTGAGCTGTTTTTTTCAAACCATATTAAGTTAGGCTGACTCGTTACATTGCTGCAAGACAGGCTGATGCAAACctgtaaataaatacttcaGCACACCCTGATTTAGCAAAATAAGGCATGTTCTAAGGTCAACATGTTTTGCTGATACTGGAATAAAAtcctgtaaaatgttttaacccAATATATTTACCCATAACCCAAACCCCTACGCTTAAACCAGGGGTGCTTATTGCTGCCCCTGGAAGGCAATTTTTTTAGCTCTAACCCAGTTAAAGATCTAGCAATCAaggttttaaagatttttagaaATTCCCAGACTGGTGTGTTGTTGTAGACTGGTGCCCTCCAGGTGCAGCGACATTACTGGTGTATAGCGTAaccataaaaactaattaattgtCATGAATGTTGTTCAATCAACATGCCATGCTACTTTAAAATTGTTAGGTAGAATTGAAAAGGTTAAGAAAGTTACCATTTCAAAACCAGACCATGTCAGATGCCTTGCGGTTTTAATTAGTGGGTGATATGAGCTAGAATTAATATCACAGTATTTTCCACTGTCCAAACGCTATCGCTATATTATATCGCGATATGATAGAAAAAAATTGGAATCACATTTTAGTTAAATTGCaggcaaaatatgtattttaacctTACATAACCAAGAAAACCCATATGATTTCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251830.1 lncRNA downstream 31385 10849823 ~ 10908594 (-) False LOC122352018
XR_006251829.1 lncRNA downstream 31385 10883655 ~ 10908594 (-) True LOC122352018
TU102556 lncRNA downstream 48506 10849823 ~ 10891473 (-) False LOC122352018
TU102549 lncRNA downstream 95939 10837512 ~ 10844040 (-) True G69346
TU102406 lncRNA downstream 493212 10445277 ~ 10446767 (-) True G69231
TU102576 lncRNA upstream 300 10947044 ~ 10953985 (-) True G69362
TU102615 lncRNA upstream 82633 11029377 ~ 11030493 (-) True G69396
TU102742 lncRNA upstream 412206 11358950 ~ 11365819 (-) True G69467
TU102798 lncRNA upstream 449932 11396676 ~ 11493120 (-) False LOC122351858
XR_006251827.1 lncRNA upstream 844037 11790781 ~ 11954234 (-) True LOC122351998
XM_043249490.1 mRNA downstream 104009 10833262 ~ 10835970 (-) True zgc:162396
XM_043249489.1 mRNA downstream 106863 10829914 ~ 10833116 (-) True zgc:162780
XM_043249417.1 mRNA downstream 253352 10680158 ~ 10686627 (-) False mrasa
XM_043249418.1 mRNA downstream 254653 10680158 ~ 10685326 (-) True mrasa
XM_043248816.1 mRNA downstream 330588 10606194 ~ 10609391 (-) True LOC122351611
XM_043248825.1 mRNA upstream 94548 11041292 ~ 11045462 (-) False fzd5
XM_043248824.1 mRNA upstream 94548 11041292 ~ 11045462 (-) False fzd5
XM_043248822.1 mRNA upstream 94548 11041292 ~ 11045462 (-) True fzd5
XM_043249268.1 mRNA upstream 104350 11051094 ~ 11085910 (-) True plekhm3
XM_043249269.1 mRNA upstream 112489 11059233 ~ 11085910 (-) False plekhm3
XR_006251823.1 other downstream 253352 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 420522 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 498107 10433507 ~ 10441872 (-) False trim13
TU102802 other upstream 550266 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 1220247 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1475685 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 1761887 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 1791300 12738044 ~ 12738171 (-) True LOC122352189

Expression Profile