RNA id: XR_006251769.1


Basic Information

Item Value
RNA id XR_006251769.1
length 589
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC122351562
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 20434116 ~ 20434969 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTCTGAGCCTATAATTGCCAAAAACGCATTTGttaCTCCTGGACAACCTTCTACACCTGAAGCAACAGATATCACCAAAACATCAATGCAGATTGTTTGGAATAAACCTGGTGTGGATGGTGGTAGCATGGTTACAGGATACTATCTGGAGAGACGTGACAAGAGGAGCCTGCGCTGGgtaaaaatatacaaagatCCCATTAGTGACACCAAAGCAAAGGTCCATCACCTCACAGAAGGAAATGAATATCAGTATCGTGTGTGTGCAATCAATAAAGCTGGGAAGGTCCATACTCAGACGTTTCTGACCTCTACAAAGCTGCTGACCCAGTTGACCCACCATATGAACCAACTAAGCTCAAGGTAGTGGACTCAACTAAAACATCAATCACACTTGGATGGTCAAAGCCAGAGTATGATGGAGGCAGTGAAATCACCAGCTATGTTGTAGAAAAAAGAGTTGGTGAGGAAGGGGAGTGGACAGTGATTAGCCATAAAGGAGAAGTGAGAACCACAGAGTATGTCGCCTCAGATCTTAAACCAGATATTGACTACTACTTCCGTGTATCTGCTGTTAATTGTGCTGG

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000902 cell morphogenesis biological_process
GO:0045214 sarcomere organization biological_process
GO:0006468 protein phosphorylation biological_process
GO:0060047 heart contraction biological_process
GO:0000786 nucleosome cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008307 structural constituent of muscle molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106577 lncRNA downstream 44417 20378652 ~ 20389699 (-) True G71924
TU106560 lncRNA downstream 131680 20297199 ~ 20302436 (-) False LOC122351563
XR_006251770.1 lncRNA downstream 131688 20296930 ~ 20302428 (-) True LOC122351563
TU106568 lncRNA downstream 216069 20215420 ~ 20218047 (-) True G71919
TU106551 lncRNA downstream 265512 20163123 ~ 20168604 (-) True G71912
TU106617 lncRNA upstream 69299 20504268 ~ 20508659 (-) True G71940
TU106618 lncRNA upstream 69357 20504326 ~ 20508702 (-) False G71940
XR_006251768.1 lncRNA upstream 167015 20601984 ~ 20602557 (-) True LOC122351561
TU106557 lncRNA upstream 177920 20612889 ~ 20630423 (-) False G71912
XR_006251771.1 lncRNA upstream 197724 20632693 ~ 20637422 (-) True LOC122351564
XM_043249005.1 mRNA downstream 5399 20426727 ~ 20428717 (-) True LOC122351726
XM_043249004.1 mRNA downstream 7389 20422913 ~ 20426727 (-) True LOC122351725
XM_043248703.1 mRNA downstream 10917 20421682 ~ 20423199 (-) True LOC122351551
XM_043249003.1 mRNA downstream 12434 20417872 ~ 20421682 (-) True LOC122351724
XM_043249002.1 mRNA downstream 17007 20411395 ~ 20417109 (-) True LOC122351723
XM_043248704.1 mRNA upstream 776 20435745 ~ 20436901 (-) True LOC122351552
XM_043248681.1 mRNA upstream 13135 20448104 ~ 20464773 (-) False LOC122351543
XM_043248680.1 mRNA upstream 13135 20448104 ~ 20462465 (-) False LOC122351543
XM_043248676.1 mRNA upstream 13136 20448105 ~ 20477732 (-) False LOC122351543
XM_043248675.1 mRNA upstream 13136 20448105 ~ 20477732 (-) False LOC122351543
XR_006251780.1 other downstream 540801 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 629517 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 712379 19720498 ~ 19721737 (-) False ankar
XR_006251863.1 other downstream 1864234 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 3178625 17235872 ~ 17255491 (-) True G71118
TU106614 other upstream 54195 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 54195 20489164 ~ 20503890 (-) True G71938
TU107092 other upstream 1274319 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 1736494 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 1864203 22299172 ~ 22307013 (-) False LOC122351746

Expression Profile