RNA id: XR_006251775.1



Basic Information


Item Value
RNA id XR_006251775.1
length 668
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC122351574
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15628883 ~ 15638436 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTTAACGTTGCCGGAAGAGCGTCCAACCAACTAAGacatttaatattcatgagccaaaCCTTCGCCTTCTTAGGCTTCGTTAACTGGCTGCACGACAAACGCAAAGCTGCCAAACGTCTGCCTTTCACCCAATCGGGACAGTGAGAGTGGAGATTGTCCCAGCTTCCGCTGCCTTTGTCATTTGACATTCAGCCGAAGATGTGGGTGAATGGGAGCACTGGTCTCTACTGAGAATGAAGAGCCAGACGTGCTCCTTTAGGAGCCTGCGAgatctgtgtttttctctcactGTGATGGAAAGTGATCAAGGCAACAAGTCCCAGTAGAGGTAACGTCTAGTGATGGTCACATCCTCGACAGGATCTCTAGCTGCTGGGAAGGTCAAGCCTGATGTGTGCAGTCGCCTAGGGTTCAGACATACCCAACATTCATCCAAGTGAATTGTACTGTGGTGTCATGCAGTGGTTAGTCATTAGTAAACGTGCAAAGGACAGACTACAGCGTTGTGCACACGTGAACAGGCAGAGAGGATGTTTCGACACTGTGCTCATCAAATAAGTTTTATATTAAAGCTTCATTTGCTGCTAGTGAAAGGTTTTGATGTAAGCTGCAGgagttaaaaaaactaaattatattcaCTCTTAATAATATGGGGTTATGAGTTATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104406 lncRNA downstream 207306 15418999 ~ 15421577 (-) True G70581
TU104306 lncRNA downstream 353042 15228296 ~ 15275841 (-) False G70503
TU104305 lncRNA downstream 353042 15269829 ~ 15275841 (-) True G70503
XR_006251729.1 lncRNA downstream 366207 15257688 ~ 15262676 (-) True LOC122351294
TU104358 lncRNA downstream 367977 15256988 ~ 15260906 (-) False LOC122351294
TU104479 lncRNA upstream 3823 15642259 ~ 15644276 (-) True G70633
TU104518 lncRNA upstream 123947 15762383 ~ 15762669 (-) True G70660
XR_006251840.1 lncRNA upstream 309677 15948113 ~ 15953976 (-) True LOC122352066
TU104861 lncRNA upstream 479846 16118282 ~ 16120319 (-) True G70894
XR_006251709.1 lncRNA upstream 966931 16605367 ~ 16631420 (-) False LOC122351188
XM_043249191.1 mRNA downstream 2092 15525358 ~ 15626791 (-) False fgf14
XM_043249189.1 mRNA downstream 2167 15525358 ~ 15626716 (-) False fgf14
XM_043249192.1 mRNA downstream 15631 15525358 ~ 15613252 (-) False fgf14
XM_043249190.1 mRNA downstream 62256 15525358 ~ 15566627 (-) True fgf14
XM_043249240.1 mRNA downstream 138638 15425447 ~ 15490245 (-) False nalcn
XM_043249079.1 mRNA upstream 19078 15657514 ~ 15680839 (-) True ankrd44
XM_043249081.1 mRNA upstream 19078 15657514 ~ 15680838 (-) False ankrd44
XM_043249082.1 mRNA upstream 19078 15657514 ~ 15680838 (-) False ankrd44
XM_043249076.1 mRNA upstream 44264 15682700 ~ 15692615 (-) False sf3b1
XM_043249078.1 mRNA upstream 44264 15682700 ~ 15691284 (-) False sf3b1
XR_006251733.1 other downstream 229446 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 322908 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 1375107 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 1689015 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 1815556 13807822 ~ 13813327 (-) True G70261
TU104521 other upstream 132985 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 1178704 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 1178704 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 1597436 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 2931319 18569755 ~ 18569882 (-) True LOC122352185

Expression Profile