RNA id: XR_006251826.1


Basic Information

Item Value
RNA id XR_006251826.1
length 1081
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC122351994
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6892652 ~ 6895397 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAAACTATCTGCAATCCTCGTTCACGTGCACTGCTTGTATAGATGTGCGATTGGCAGAGCGCTTTCTCAGACAGGGATGATCATTGTGCTGATAAATGCAATGAGCATGTGAAGAAAGTTCAGTCTTTTTCTCTCCGTCTGCTGGCTGCATATGGTTTTCACTGCAACTCCTGAAATCTGTCATGTCAATAAAATCTTGTATAAACATGAATGACATTGCGACCGGTAAATGTACCACagagctgtttttcttttacttctGCGTGTCCCTGGCTGTTTCTTCTATCGGCGTAATCACAAACGGTCCCTCACCGCTGAAGTAACACGGATATGTTGAGTCTGGTTTAGAAGAAGAATGATGAGTGATGGCATCTTTTCTGGCAAAAAAGCAAAGCACTCTTCATGTTATTTTGCTGGTCAGTAGCACTTAGTTGAAAAGGACACAAGCTCAGTGTTTGGAGTTTAGACTCACTCTTACAAGCTTTTCTCTGCTTCCAACTTCTAGCACACAGGGGGAAGTGATGTCTCGTATTTGTCTGCTAGCACTTCTCTGCACCTTCctgctgatttgtttttgtgaagcgGGCGTTCCGGTTCACAAGGAGATCAGGGCGAAGAGAAGTCTCCCGTACTGGAACCTGTGGTCCTCTGATTTCTACGGCTGGGTGGATGAGTTGAGATCTCAGAGCGGATATGACACGCTGCTGGACTTGGCGAGAAACTATTGGGCTCACTTTCCCATTGCTGGTTTTCTAGGGTACGGAAGCACCCCAGGGCAAAAAGACTATCAGCCAGAGCTGGAAGTTgaagacttaaaataacatggCAATGTCTTTCCCACTGGGCTCCCTCTGTATACTGTTTTCCCCTCCATTAGCCGCCTTGGTATCTATTCCAGTACATGTCTTTTCCTTATGGAGCAACCCCCTAAAATCTCTGAATcagttttacagattttttctCTAGCTCactcttttatttttgcacactAGCTGTATTCGCAAATGACCCATGTGATTCATAGACGTTTATTGTGAGTACAACATTAAGCGCATTTTGTCAATGTAACTAcagcaata

Function

GO:

id name namespace
GO:0008544 epidermis development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101086 lncRNA downstream 9676 6882585 ~ 6882976 (-) True G68357
TU101051 lncRNA downstream 79637 6809848 ~ 6813015 (-) True G68328
TU101058 lncRNA downstream 98277 6793402 ~ 6794375 (-) True G68333
XR_006251776.1 lncRNA downstream 115678 6775286 ~ 6776974 (-) True LOC122351577
TU101056 lncRNA downstream 116237 6775074 ~ 6776415 (-) False LOC122351577
XR_006251860.1 lncRNA upstream 87281 6982678 ~ 7035361 (-) True LOC122352164
TU101108 lncRNA upstream 251043 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA upstream 251043 7146440 ~ 7153954 (-) False LOC122351350
TU101258 lncRNA upstream 432432 7327829 ~ 7341494 (-) True G68473
TU101275 lncRNA upstream 485893 7381290 ~ 7381508 (-) True G68489
XM_043249722.1 mRNA downstream 4278 6883488 ~ 6888374 (-) True ecrg4a
XM_043249721.1 mRNA downstream 4551 6883488 ~ 6888101 (-) False ecrg4a
XM_043248737.1 mRNA downstream 60398 6807329 ~ 6832254 (-) True tmtops2b
XM_043249753.1 mRNA downstream 165854 6719754 ~ 6726798 (-) True si:ch73-390b10.2
XM_043248124.1 mRNA downstream 184444 6686218 ~ 6708208 (-) True LOC122351204
XM_043249561.1 mRNA upstream 1080 6896477 ~ 6943442 (-) False nck2a
XM_043249562.1 mRNA upstream 1080 6896477 ~ 6943442 (-) True nck2a
XM_043249559.1 mRNA upstream 1080 6896477 ~ 6943439 (-) False nck2a
XM_043249563.1 mRNA upstream 1080 6896477 ~ 6925051 (-) False nck2a
XM_043249415.1 mRNA upstream 69832 6965229 ~ 6969207 (-) False c9h2orf49
TU100887 other downstream 631583 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 792769 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 848727 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 969832 5919757 ~ 5922820 (-) False LOC122351463
XR_006251815.1 other downstream 1523063 5349955 ~ 5369589 (-) False LOC122351925
TU101110 other upstream 175588 7070985 ~ 7148620 (-) False LOC122351350
TU101496 other upstream 1119052 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 1183739 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1445546 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 3012791 9908188 ~ 9910178 (-) True LOC122351483

Expression Profile