RNA id: XR_006251827.1


Basic Information

Item Value
RNA id XR_006251827.1
length 1394
lncRNA type inter_gene
GC content 0.44
exon number 5
gene id LOC122351998
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11790781 ~ 11954234 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTATTTCGCTGGAAATTATAATGGATCGTTCTTTGGAAACGCTTCTCTTCAGTGAATCGATCAAACGGCTCGGTTCCCGGTTTGCATCGTTTCGCGATTCAGAGTGATTCAACTCGGGCGGCTCGAAAAGAGTTTGACGCTACCGAGCGTGATAGGAAACTTCGAGAAGGATAAAGAAGCGCATTGAACTTATATACAGTTTGCTTGAAAGCGAACCTACAAGTCCACGTTTTCGTTTCCCAGCGATGAAGATTCATTGGGACCAACACGCGCACGTGCGTCCTCTAATGCAGACATGACATCATCAGACGTGACTCTGTCAGAAACGTGTGTGGAAACACAGTCCAGATCTGTTCCTCACGCCTGGGTTTTTCAACCGTTCCGGTCGGCAAAGAATGTCAGATCATCAGAGAAAATACCACGGTAATACTAGACAGCGCAGACGAGATTGAGGGAAAAAGGTCAACATGTGTTGGTTCATCAGCAGCATAACAGCGCAATGTGCCAGAACACTGACACCACacggagagagagggagagagagacagGCCTAAATCATCACCCTTTTCATGAAAGAGACTGAACAGACTGTCGACGGGGAGAGGGCCACGTAAGAAGGTTTTCTCAGGCCAGGAGAGAGTTTCAGATTAGAACATCTGGAGTTTCATGTTGAAACGGCATCGTTCTCCCACCGAGACCCGAGTGAAACCATTAGGCCAATGAAGACAGAAGAGCAAGTTTGACTGCGCCGACGCACGCAGCTTTCCGGTACGCTCTTTAATCACCGCTTATCTGCAGGAGCACAGTTAAACACCTTCCTCTCCCTCCTGTTGAAATCTACATCACTCCCACAAGCCTCGGcccttcatctctctctccctttaaTGTAATGTCATTGTTTTCAGTTGTACTttgtttcctctctctttttccccaAGTTTGAGAAAACAGCCTGCGCCGCTGATATGTGTGCCAACTATGACAAAAGCGCTGCTGAGGAATGTTGCCGTGTGTCTATATGATAGAATGCTGGGTAAATATAGCTGTCGTTTTCATACGGGTCTGTTTCTGCACCATTGTTTTCGCTGACAGAATGAAAACACAAGGCCCAAACAGATGCAGAAGAATACGGTACACCGTGCATACATTCAGTCAtctattttctctttttgtgtgttCTGTCTAGCGTTTTATTGACCGTTACAATTATATAGTTCGAAAAGGCTTTGCGGCAATTATAGTGAGAAGAATTATTTTTAGCTACTTTTAATCAAAAAGCGCATTTTAAAGGGAGTTTGTGcacatgtattaaatatatattataaaaaatatattcagatgttcgttttttttttctttatcttcttAACTGCTATTAGGTGTAAAAAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102798 lncRNA downstream 297661 11396676 ~ 11493120 (-) False LOC122351858
TU102742 lncRNA downstream 424962 11358950 ~ 11365819 (-) True G69467
TU102615 lncRNA downstream 760288 11029377 ~ 11030493 (-) True G69396
TU102576 lncRNA downstream 836796 10947044 ~ 10953985 (-) True G69362
XR_006251755.1 lncRNA downstream 844037 10939979 ~ 10946744 (-) True LOC122351427
TU102924 lncRNA upstream 131480 12085714 ~ 12156439 (-) False G69596
TU102926 lncRNA upstream 131480 12085714 ~ 12156439 (-) True G69596
XR_006251707.1 lncRNA upstream 313878 12268112 ~ 12270147 (-) True LOC122351183
TU102946 lncRNA upstream 325559 12279793 ~ 12280197 (-) True G69607
XR_006251738.1 lncRNA upstream 349480 12303714 ~ 12321820 (-) True LOC122351337
XM_043248275.1 mRNA downstream 290286 11496947 ~ 11500495 (-) True LOC122351308
XM_043249495.1 mRNA downstream 326367 11454069 ~ 11464414 (-) True LOC122352021
XM_043248236.1 mRNA downstream 386485 11400551 ~ 11404296 (-) True gtpbp8
XM_043249224.1 mRNA downstream 391566 11396666 ~ 11399215 (-) True LOC122351858
XM_043249222.1 mRNA downstream 394118 11392240 ~ 11396663 (-) True LOC122351856
XM_043249140.1 mRNA upstream 28734 11982968 ~ 12000692 (-) True efnb2a
XM_043248593.1 mRNA upstream 49770 12004004 ~ 12009937 (-) True arglu1a
XM_043248386.1 mRNA upstream 136897 12091131 ~ 12189651 (-) False gtdc1
XM_043248384.1 mRNA upstream 206268 12160502 ~ 12194961 (-) False gtdc1
XM_043248385.1 mRNA upstream 206268 12160502 ~ 12194907 (-) False gtdc1
TU102802 other downstream 291409 11497010 ~ 11499372 (-) False LOC122351308
XR_006251823.1 other downstream 1104154 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 1271324 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 1348909 10433507 ~ 10441872 (-) False trim13
XR_006251743.1 other upstream 212757 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 468195 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 754397 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 783810 12738044 ~ 12738171 (-) True LOC122352189
TU103179 other upstream 1030890 12985124 ~ 12985978 (-) True G69757

Expression Profile