RNA id: XR_006251835.1



Basic Information


Item Value
RNA id XR_006251835.1
length 1542
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122352045
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 23361012 ~ 23380056 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tggCCCCTAAATCGtgcaataattataaaattgttaaaaacatattgatGGTATTCTTACCATCAGTGGACATTCTTATTACCGTAATTCTATTTTACTTAATAAGCATCTATTAACGGCAGTACAAAAACTTGTATAATGCAAACAATACTTCAcagattacattaaataatgcatgatttttcttcatgtttcaGTAATGAGATCTTTTTTCCACCCTCAAACATGCCCAGAAGACACATGCTCGTTATGAAATCAATGTGGCGCGGTTCATCCAGGGGGTTTAAATGCACAGGCATGGTTATGTAAGACATCATAATCCACTGTTACTATGGTTACCACAGCCCCAACTGACTTTGGTGGTGCTTCAAGAAAGCACACTTCTGCTTCTGACATCAGTCTAGACATCGGGACCTGTGGAAAACACGacacattatacatttaatgcGCTGTTTAGAACGCATCAGATGTATTTTACATGACTACTGGAGCAAAGTGCATCTGTTGTGTGAAAGGGATTTCGAACGGGTTCAGGCCAATACCTCTCAAAGATCGCGAGATCGAGATAAGAAAATCCAGTCGATGGAGTCTGATTaccagaggaagagagagagagagagagagaggatgaagaGCTGAGAGGCTGCTGGCGGATGCTCAggagagagacagtgtgtgtgtagaagGTGCCAGGAGGACGTGTCACTTGTTGGCGATTTGGAACCGAGAGCACCTACGCTGAGCTGTTCTGGGGCCTGCTGCATTTAACGGGATTGGCTGATGGACTGGGGACTGAGCCATTAATCTCTCCTCCCTCTTATCCAATTACTGCACCTATAGAGGAGCGGAGCGGGGCAGAGAAAGCAGAGCGTTCGTGCCAAATGCCAGCGGCGAGTCACAACACAAGATCACAGGGACGGAGTTTTACGATCGCAGCCATCGTAAGGAGACGTAAAGGTGTAGCTCAAGCCGAAATCATCGctttgtctttatttactcaccttctaGTGTTTCAGCTCAAACCTCAATGGGAGGCACTGCTGGCCATGCACCTATCCAATTagaaattttgttttttatagtgttttttcagacttgtggaaagaaaacatccaaaagacaCTGTTGAGTGTTtcttttatagcactttatcTATTTTTATCAATAGATTTCAATcgcaatacatatttttaaaggccTTTTTCTGAAAATGAGTTTGCTCTCCTACGCTGAACCATATATCTCCATACAAACACAccaaactttaattttttatccCTGTTTATACCCTTTTTTTACAGAGggatttttcatatataatttgcatgataatatatattttattccccccaaaaactgtcaaaatgtgctgttttctgTCCGTTTTAAATGAGATACCCAAAATTCCCTCTGTAAAAACTCTTGACCCTAATatgtcaaaataattaaataagaattttgaattagaatttttcctgcgtttagatttttgttttagaaatatatgCAAGTTAGcgcatgtttaattaaataatgtattat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006251832.1 lncRNA downstream 10071 23331281 ~ 23350941 (-) True LOC122352044
TU107712 lncRNA downstream 10190 23308487 ~ 23350822 (-) False LOC122352044
TU107711 lncRNA downstream 10190 23320486 ~ 23350822 (-) False LOC122352044
TU107710 lncRNA downstream 10190 23331289 ~ 23350822 (-) False LOC122352044
TU107714 lncRNA downstream 16978 23338694 ~ 23344034 (-) True G72816
XR_006251836.1 lncRNA upstream 14908 23380158 ~ 23387077 (-) True LOC122352046
TU107858 lncRNA upstream 68926 23434176 ~ 23434476 (-) True G72881
TU107866 lncRNA upstream 107163 23472413 ~ 23472728 (-) True G72889
TU107891 lncRNA upstream 172254 23537504 ~ 23540103 (-) True G72909
TU107903 lncRNA upstream 193503 23558753 ~ 23634077 (-) True G72918
XM_043249532.1 mRNA downstream 70873 23281514 ~ 23290139 (-) True LOC122352042
XM_043249636.1 mRNA downstream 116765 23005838 ~ 23244247 (-) True hdac4
XM_043249637.1 mRNA downstream 249212 23005838 ~ 23111800 (-) False hdac4
XM_043249638.1 mRNA downstream 249413 23005838 ~ 23111599 (-) False hdac4
XM_043248246.1 mRNA downstream 454700 22902448 ~ 22906312 (-) True agr1
XM_043249020.1 mRNA upstream 25442 23390692 ~ 23410990 (-) True LOC122351748
XM_043249534.1 mRNA upstream 54012 23419262 ~ 23426434 (-) True gjc4b
XM_043249535.1 mRNA upstream 54012 23419262 ~ 23426000 (-) False gjc4b
XM_043249556.1 mRNA upstream 199129 23564379 ~ 23649560 (-) True LOC122352061
XM_043249021.1 mRNA upstream 350859 23716109 ~ 23717055 (-) True LOC122351749
TU107329 other downstream 849705 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 1053999 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 1137345 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 1634192 21709288 ~ 21726820 (-) True G72363
TU106615 other downstream 2857122 20489164 ~ 20503890 (-) True G71938
TU107929 other upstream 564957 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 590969 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 855272 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 865985 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 906205 24271455 ~ 24280708 (-) True G72978

Expression Profile