RNA id: XR_006251836.1


Basic Information

Item Value
RNA id XR_006251836.1
length 442
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC122352046
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 23380158 ~ 23387077 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAACCGCTGTCAGTGCAAATGGCCCTTTAGATAAGAGAAAGACAAGAGAGGGCCTCCGGAGAGCTCCACTGCCTTGCAGGATCCTACTCCGTCCTAGCTTTTATTAGTCTTGGAACGGACGACCTGTTGCATATTCTGAAGGGTGCTTTTAACCTCCCGCCCGTGAGGTCATGATCGGTCTCCAGAGCGACTTCTTTTGGAAGAAAGGATCAGATCAATTAACCACAGGCGGATGATCTGCCCGGCACACACCACAGGCGTTGTGTTTTCAGGAAGACGTGTCAAGCTAAAGGCGCTgTGTTTGGActccattctgacggcacccattcactgcagaagaccCATTGGTGAACGACTAAATCTCTCTCAAAACCCGatgtgatgaagaaacaaactagaTTCTAGATTTTTGATGGCCTGatggtgagtacattttcagc

Function

GO:

id name namespace
GO:0042440 pigment metabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:0042168 heme metabolic process biological_process
GO:0046148 pigment biosynthetic process biological_process
GO:0033013 tetrapyrrole metabolic process biological_process
GO:0033014 tetrapyrrole biosynthetic process biological_process
GO:0006778 porphyrin-containing compound metabolic process biological_process
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0006783 heme biosynthetic process biological_process
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251833.1 lncRNA downstream 102 23361012 ~ 23380056 (-) False LOC122352045
XR_006251834.1 lncRNA downstream 2281 23361012 ~ 23377877 (-) False LOC122352045
XR_006251835.1 lncRNA downstream 14908 23361012 ~ 23365250 (-) True LOC122352045
XR_006251832.1 lncRNA downstream 29217 23331281 ~ 23350941 (-) True LOC122352044
TU107712 lncRNA downstream 29336 23308487 ~ 23350822 (-) False LOC122352044
TU107858 lncRNA upstream 47099 23434176 ~ 23434476 (-) True G72881
TU107866 lncRNA upstream 85336 23472413 ~ 23472728 (-) True G72889
TU107891 lncRNA upstream 150427 23537504 ~ 23540103 (-) True G72909
TU107903 lncRNA upstream 171676 23558753 ~ 23634077 (-) True G72918
TU107885 lncRNA upstream 211910 23598987 ~ 23600892 (-) True G72904
XM_043249532.1 mRNA downstream 90019 23281514 ~ 23290139 (-) True LOC122352042
XM_043249636.1 mRNA downstream 135911 23005838 ~ 23244247 (-) True hdac4
XM_043249637.1 mRNA downstream 268358 23005838 ~ 23111800 (-) False hdac4
XM_043249638.1 mRNA downstream 268559 23005838 ~ 23111599 (-) False hdac4
XM_043248246.1 mRNA downstream 473846 22902448 ~ 22906312 (-) True agr1
XM_043249020.1 mRNA upstream 3615 23390692 ~ 23410990 (-) True LOC122351748
XM_043249534.1 mRNA upstream 32185 23419262 ~ 23426434 (-) True gjc4b
XM_043249535.1 mRNA upstream 32185 23419262 ~ 23426000 (-) False gjc4b
XM_043249556.1 mRNA upstream 177302 23564379 ~ 23649560 (-) True LOC122352061
XM_043249021.1 mRNA upstream 329032 23716109 ~ 23717055 (-) True LOC122351749
TU107329 other downstream 868851 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 1073145 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 1156491 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 1653338 21709288 ~ 21726820 (-) True G72363
TU106615 other downstream 2876268 20489164 ~ 20503890 (-) True G71938
TU107929 other upstream 543130 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 569142 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 833445 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 844158 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 884378 24271455 ~ 24280708 (-) True G72978

Expression Profile