RNA id: XR_006251839.1


Basic Information

Item Value
RNA id XR_006251839.1
length 689
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC122352063
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8859473 ~ 8860379 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCCGCGCGCTGAAGACGGAGAGCAGATCAATGCATTTACCCGCGCGCACACTAAATACACCGACACTTCTATATAAAGACAAAGGCCTCGGGTCTGTGTGTTATAACGCTACCGACGCGACCAAACGACGCGGAGAGAAGACGTCGTCGTCGTCAGAGACGTAGTGAACGAGTGGACGCCCAGGAtggatgttttgtgttttctgtactTGTCTCACGTTGAGCCACGCGCACAATACCTGCAGATGAAAAGGTTTTGTTCGTTCGGCTCGCGTTAAGCAGATGCAGACCCTCGCCAGTAAAACACCCCATCGGCTGATATCTCTCCGTCGCGCAGTGATATGCTGATTAACTATAAAATATGCTCAGTCGATGAAATATGCAGACTAATTTCTATGTTCATTGCCTATTTATTTACTTGGCGTGTAGACCAAAGCAAGTatgttaaaagctttttaattattcatttactgATTAACCAGTAGCACTTGTAATATACTGTAAGGTCAACATTTTGTGAATTAAACCATTACATATATAACCGTGACATTCTGTtttctatgtatatatttgtaataatcagtaTATTGCCATTAAAACTCAAATACAGACAATTGATGAAAAGCCCTGGTGTTTAATATGTGAATAAGTGTGTAAATATCCttactaaatttttttttatatcctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101758 lncRNA upstream 32427 8826212 ~ 8827046 (+) True G68808
XR_006251751.1 lncRNA upstream 244489 8600724 ~ 8614984 (+) True LOC122351403
TU101678 lncRNA upstream 353330 8502756 ~ 8506143 (+) False igf2bp2a
TU101562 lncRNA upstream 636656 8222587 ~ 8222817 (+) True G68678
TU101545 lncRNA upstream 653510 8203853 ~ 8205963 (+) True G68668
TU101765 lncRNA downstream 6760 8867139 ~ 8868277 (+) False fev
TU101845 lncRNA downstream 187081 9047460 ~ 9078537 (+) True G68879
TU101846 lncRNA downstream 202741 9063120 ~ 9064676 (+) True G68880
TU101861 lncRNA downstream 297897 9158276 ~ 9160821 (+) True LOC122351827
TU101871 lncRNA downstream 315945 9176324 ~ 9178926 (+) True G68895
XM_043248054.1 mRNA upstream 27571 8827690 ~ 8831902 (+) True umps
XM_043248053.1 mRNA upstream 35082 8801297 ~ 8824391 (+) True itgav
XM_043249543.1 mRNA upstream 61538 8793317 ~ 8797935 (+) True zc3h15
XM_043249719.1 mRNA upstream 157178 8651167 ~ 8702295 (+) True znf804a
XM_043248052.1 mRNA upstream 289476 8566454 ~ 8569997 (+) True nup35
XM_043249421.1 mRNA downstream 3008 8863387 ~ 8866305 (+) True cryba2b
XM_043248266.1 mRNA downstream 6718 8867097 ~ 8871633 (+) True fev
XM_043249163.1 mRNA downstream 106482 8966861 ~ 8976999 (+) True chpfa
XM_043249573.1 mRNA downstream 282213 9142592 ~ 9150093 (+) True si:ch1073-416j23.1
XM_043249574.1 mRNA downstream 282213 9142592 ~ 9150093 (+) False si:ch1073-416j23.1
TU101615 other upstream 425990 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 516794 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU100736 other upstream 2894593 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 2973720 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 3401944 5457458 ~ 5457529 (+) True trnam-cau_112
TU101764 other downstream 4270 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 282213 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 282213 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
XR_006251853.1 other downstream 582746 9443125 ~ 9556647 (+) False thsd7ba
XR_006251850.1 other downstream 1468352 10328731 ~ 10395230 (+) False il1rapl1a

Expression Profile