RNA id: XR_006251847.1


Basic Information

Item Value
RNA id XR_006251847.1
length 2473
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC122352087
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22585744 ~ 22588251 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttatagtttattttagtacatatatatatcgaaatatataacaaaatatatataacaaaaatattttatatggttTTAGTTAATATGCTCAATAACATACACTGATTAATCACGCACATTAAGCGTAGGAACACAAATGTGTCAAATATGTTTGATGTTATTTGAAAACTCTCTCTTACCGTGGAATTTGAGTGCATGAAACTACTGCAGTCTGTACCTGTAAGGCTGGTCCACAGCTGTCATTGCAACAGCTCTCTGGAGCAGGTTGTTTACAAAGAGTGACTCTGTATGACTCTATTACTGTAGATTACTGTAATGCCGGGCCCAGTACTGAGCCACAGCATTGAGAAGCACAaacagactctctctctttccctgaCAGCAGGAATGCTTCACAAAACACTGCAAAAGCATGCTCGTTTGGACTGGCTCCAGGTTTGCTCTCTATCCAGAGACCAACAGCCAAAGGAACATGAGGGGAGTTTTCAGGTCAAGAAACCTCTGAATTCACTGCAAAACACAATATtcttatttagtatttttgtctttgcaaTAAGGTTCATcggttaacaacattagtaaacatgaacAAAGAACAAACGatacttttacagcatttattaatcttaatgtaAATTTTTCCATGTACTAATGcgttattaaaaacaaaagttgtgtttgttaacattagttaatgcactgtgaactaacatgaataaacaatacagtattttcattaaataacattaataaagataaaaacataatgtaataaatgctttttttattgtttgttgatgttatttaatatatcaacTCAAACAATATGAcaacttattgtaaagtgttactgaatttTCTCCTCGTCATGACTCGAAATATCAAAATTATGTGAATTTATGCATTAAACACAAACTTAATTTAAAGGGGAAACAAggttatttcttgtttttagaaaaaaaaatattttgataaatattaagACAAGATTTAAAggattaaaaatttaaatggactAAAAATGACTCACTCTCAGGACATCTAAGATATAGATGAGTTTTTGTctttattgcaatatatttgGAGACATTTAGCAATACTTTCCTGCTCAtcaatagatcctctgcagtgaatgggtgccgtcacaatgagagtccaaagagatgatgaaaacatcacagggTAGAAGGATAGAAGACTCACATTTCAGCCAGAagaaatggttttaaattaaaaatgtctcaaCAACGAATTAGTTTTATTACAAACgcacagcttttcatttcacatgACTTTAATTGACGGACTGGAGTCATGTAgataattgtgatgtttttatcatctgtttgggCTCTCGTTccggcggcacccattcactgcagaggatccattggtgagcaagtgacgcAACGCTTtggatttctccaaatctgctctgattaagaaacaaactcgtccACATTTCGGACGGGCCTCGGGGTGAGTAAAGTTCATCACGCGTCAATAAGAATAAATACGTCACACCGAGTTAAGATTAAAGATCTTTACTTGAACCGAAAGTACAGTGAAGAAATATTCTTGTTCGTCTTGGAAGACAAAATGTCTGTTTGTGAAACTGGTGTCATCAACAATGCATACATTAATGGCCGATAATGGACGCGCGGTGGATTCTGAAGCGTCATGTACAGTTTGTACATTGATGGCCATTTTAATCGCATGACGCTTGCAAATGCAGCTGACACTTAAGATCAAGCATATCTACGAGAGAACAGAACTACAGAAATTATCatgtaaaaagctttttttcttttttttttttaaaatgaacatcatTCAGAAAGCCCAACAGCTTGTTTTCGTCGTCCACGATAATGTTACACGCTCCCAGCCTTGGATCATCTCGACGTCTCTGTGCTCCTGCCAAaagattctctctctcactttctctctctctctctctcactctctctctctctctctctctcccccgcGCCGTTCTTCATTGTTCTTCGGAAGAACGGTTAAACCTCCTGAGGGGGAAATTCGGCGCAGCTGCAGTTTGCGATGAGAGCGCGTCTGTTGCTTTTGCACACAGCGAGCTCAATGGAGTGCTGCGTCACGTCGAAGCGCACTGGCATCTTTGGGCCCTCAACACTCCTCCCTCCTCCCGTTCATTCCACCCTTTCCCAACAAGCATACAGAGCAATGTCAAACCAACATTTTGTTTGTGCAAAGGCAACATTTTGTTTATGAgaatataacaacaataaaaacacaaagtctcagccaaaaatgaaaaacaaaaagtacaatagtgcaatttttcagtttttttttttgaacctTCCTCTCCTCCTCGGGATTGTCCGTGTGGTTTTTCTTAAGGACAGACGGTTAGTGGCGGCTCCGTCTCGTGTTGCTCCTGCCCGAGTTCACTCGGCTCTGCTCACGCAAAAGCAGGTCCCAGC

Function

GO:

id name namespace
GO:0050509 N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107400 lncRNA downstream 4972 22579803 ~ 22580772 (-) True G72583
TU107338 lncRNA downstream 126986 22311078 ~ 22458758 (-) True G72535
TU107317 lncRNA downstream 140249 22297007 ~ 22445495 (-) False LOC122351746
TU107333 lncRNA downstream 140249 22297050 ~ 22445495 (-) False LOC122351746
TU107340 lncRNA downstream 275266 22307182 ~ 22310478 (-) True G72537
TU107436 lncRNA upstream 64251 22652502 ~ 22653575 (-) True G72605
TU107432 lncRNA upstream 70066 22658317 ~ 22658828 (-) True G72603
TU107440 lncRNA upstream 78646 22666897 ~ 22667111 (-) True G72608
TU107450 lncRNA upstream 112478 22700729 ~ 22701019 (-) True G72615
TU107487 lncRNA upstream 239847 22828098 ~ 22891619 (-) True G72646
XM_043249423.1 mRNA downstream 44034 22537975 ~ 22541710 (-) True dusp19a
XM_043249018.1 mRNA downstream 75220 22446393 ~ 22510524 (-) True LOC122351746
XM_043249180.1 mRNA downstream 101035 22482226 ~ 22484709 (-) True LOC122351832
XM_043249520.1 mRNA downstream 187091 22341408 ~ 22398653 (-) True LOC122352034
XM_043248644.1 mRNA downstream 357245 22225558 ~ 22228499 (-) True neurod1
XM_043249029.1 mRNA upstream 9577 22597828 ~ 22610069 (-) True dnajc10
XM_043249030.1 mRNA upstream 23107 22611358 ~ 22615781 (-) True LOC122351760
XM_043249032.1 mRNA upstream 28613 22616864 ~ 22620788 (-) False LOC122351761
XM_043249031.1 mRNA upstream 28613 22616864 ~ 22620788 (-) True LOC122351761
XM_043249493.1 mRNA upstream 33807 22622058 ~ 22635997 (-) False vil1
TU107329 other downstream 74437 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 278731 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 362077 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 858924 21709288 ~ 21726820 (-) True G72363
TU106615 other downstream 2081854 20489164 ~ 20503890 (-) True G71938
TU107929 other upstream 1341956 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 1367968 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 1632271 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 1642984 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 1683204 24271455 ~ 24280708 (-) True G72978

Expression Profile