RNA id: XR_006251855.1


Basic Information

Item Value
RNA id XR_006251855.1
length 1200
lncRNA type inter_gene
GC content 0.32
exon number 3
gene id LOC122352111
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 1693724 ~ 1695529 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGCATTTAGagcaacatggactagaatggcttgatgaaaacagagctgattttgacagggtaaaaaaaggtgttttttacactattattgataaattaaaaaataatgtggtAAAGTTGTTGTTAAGATATAACAGGTATAAGACCCTAAATAATCATATCAACTTGTTTGGAAACTTGCATCGGATGAGACACTATTACATACGTACTACGTACACTGTTCACTGTCAGCTGCGCCACAagaataattttaaatcagtttttgttcaaaagaatattctccaaaatggggCTACGGTGATGCAGAGACATAGAGGAGatgaattattgaataaagtagttattttattttcatacaaaagtttcataacattcagattgaaccactgatggaagatggactattttttcatacttttctggaccacGAAGTGCAATTTGTATGTGAATGGGTCCCAAGCCTCCCATTTTTCAtctaaaacatcttaaattgtgttctaaggatgaacaaagctttaatgtttttggaacaacaatggggattcAAGGGTAATCTGTGATTACGACTGATAAAAGCAGCGAGGGAAGTAATCATCAGAATGTGAATTTCCAGCATCTCTAGTCGCCTGTGTTTCATGATACTTCAGAAAACATTGTAATATGCTAATTtcctgctcaagaaatatttctgattattatcaatgttgaaaacagttgtgctgcacaatatttttgtccACAGTGTTTGCCAAAAGTTTTTCTGACGCGGCACAGTTTTGATATGCAAAAAATTCCCCATAGAATACCACTAAGTATTATAAAGaataatactaattataataaaaaaaaaattttattagtaattaaacATTGCATCATCAGAGTTGGTATTTTGGCTTTATATATGATTTGGCAATTAAGATAAGATTTAAAAGATTTAgaattaagattaagattaagtTTTTTAATGACCGAATGACAGATATATTTGTCAGTTTGCAGATTATAAAGTTTACTGTAGCTCTATGGGCACTCAGTTTGTCATTTGGCCAAAATCTCATGTTATATTCTGTAAACTATATTCATTCTtgaaaaatatggtaaaaatatgaaaaatggtatctgcaagGATTTTCAATCGGAATTGAGACCATACCacagtactgagactgctctcattagagttactaatgacctgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99157 lncRNA upstream 1248 1688655 ~ 1692476 (+) False G67023
TU99158 lncRNA upstream 1248 1688655 ~ 1692476 (+) True G67023
TU99160 lncRNA upstream 1248 1688655 ~ 1692476 (+) False G67023
XR_006251746.1 lncRNA upstream 19126 1671371 ~ 1674598 (+) True LOC122351376
TU99052 lncRNA upstream 99272 1585935 ~ 1594452 (+) True G66952
TU99198 lncRNA downstream 73851 1769380 ~ 1769588 (+) True G67048
TU99207 lncRNA downstream 83385 1778914 ~ 1779210 (+) True G67057
TU99214 lncRNA downstream 166325 1861854 ~ 1865589 (+) True G67064
TU99217 lncRNA downstream 166325 1861854 ~ 2086178 (+) False G67064
TU99224 lncRNA downstream 199953 1895482 ~ 1903183 (+) True G67071
XM_043248412.1 mRNA upstream 5255 1660010 ~ 1688469 (+) True LOC122351375
XM_043248887.1 mRNA upstream 377829 1299556 ~ 1315895 (+) True LOC122351663
XM_043248881.1 mRNA upstream 454701 1231173 ~ 1239023 (+) False LOC122351657
XM_043248880.1 mRNA upstream 454701 1231174 ~ 1239023 (+) True LOC122351657
XM_043248878.1 mRNA upstream 614477 1067025 ~ 1079247 (+) False LOC122351655
XM_043248940.1 mRNA downstream 18283 1713812 ~ 1727530 (+) False bpifcl
XM_043248938.1 mRNA downstream 18284 1713813 ~ 1736320 (+) False bpifcl
XM_043248941.1 mRNA downstream 18284 1713813 ~ 1736320 (+) False bpifcl
XM_043248939.1 mRNA downstream 18299 1713828 ~ 1736320 (+) True bpifcl
XM_043248603.1 mRNA downstream 166280 1861809 ~ 1865607 (+) True ndufa4l2a
TU98836 other upstream 558735 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 833568 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 888715 797133 ~ 805009 (+) True G66727
TU98627 other upstream 1231695 459574 ~ 462029 (+) True G66657
XR_006251792.1 other downstream 18284 1713813 ~ 1729395 (+) False bpifcl
TU99551 other downstream 1499266 3194795 ~ 3196521 (+) False LOC122351419
XR_006251861.1 other downstream 2218109 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 2252507 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 2285998 3981527 ~ 3983582 (+) False G67566

Expression Profile