RNA id: XR_006251856.1


Basic Information

Item Value
RNA id XR_006251856.1
length 1416
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122352115
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17343716 ~ 17351712 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAATAGCACAACAGCTAACCATGTGTCAGAGTTTTCACCTATAATGAGAACTGCAGCAATAAATTTTtagaagaagaacaaaaaatgtgtttaagctTTTAATCCAAAATTGTTTTTTCTTAGACAATAATTATTAGGCTTGGAGATGAGTGTGGCTAGAGGTATTTTCCTTCCAGTGTCACACATAAATTTGCTTTGTCTGATGAGTGTCTGATTAACTCTTTAAAGGACAAACCTTTCTGATTTCTTGCTTCTGTGTTTCTTTAAGCCCAGAGAGCCTTGAGCACATACTATCTCAAGTTACCAGAGTGACCAGACTTATAGATGAGTTGGTTACCATGGTGATGGAGCAGAAGACTGACAGCTGGTTACTGTAGTAGTGGCATTGGAGATGGATGAGACCACTTTAGCTATAGTGGTCCTCCCTTTCATTGGGAGTATGCGGGATGGATGAATCTACTTTAACAGTTTACCTCCACCCCAGCTGACAAGACACATCCTCAAGTCCCTGCCCATTTTTGGTCATGGAAACTATGTACTGCCACCCACAAGAACTCTCTTCAGAAATATCTATTTACCTTTCTTccactgaagaagaaaaacaacaacaacatgagggcgagtaaacaacaatcttcatttgtgtgaaagtgaagattttttattttttcatttgccCTGGTCGTTTAGGTCTTTTATGATTATAAATATCCAAGAACCTTTCACCTTTTAAGGTTCAGACATCGTTTTTCATCAGTTCCCTTGAACAATCAGACAGCGGATTTCCACTAAAGGGAAAGATTGAGAAGGACATGCTCGAAAGTGTTCTCAACATCAGCATTCCAAAAGGCTTTCTAGGTTAGGAGAGGTGAGAGTTATTTAGATTGTGAGAGGTTGTATGAGATAGAGACGTATTTAAGGATTGAGGTATGGAGTTATAACCTGACAGCACGGAGTCCTCACTGCCCTGAGCGCTCTCAGTAGTGGAGTGACAGAGATGGATGTGGCTGCACTGCAGTGCTAACGTCCTCAGCCTCAGGGTCAGTGCAAAGCAGGGGAACAATCCCATCAACCTCTCCTGCAGGAATAACACTCCCTAAACTGACTGGCATTTGTGAAGCAAGTGCCATACATACCGGCCTTTAGcctagaaattaaaaaaaacgaaattaaCATTTCTTACAGTCTTCACCATCACCTTTTTATGCTTTGACCTTTGAGATCCTCTGAAAAAATGGCGTGTTTCTTTAACATATCAGTGCACTTATAAGTGTAATTATAATGGCAATCCAAGTcattttttattctcatttataTGACATATGAACTATGAtaagtattatattttgttgttatttgatGTATAATATAGTGCTGGGCAAcggttaattgcaattaatcgcatccaaaataaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105278 lncRNA downstream 2801 17340545 ~ 17340915 (-) True G71134
TU105275 lncRNA downstream 4186 17339120 ~ 17339530 (-) True G71131
TU105257 lncRNA downstream 46566 17212876 ~ 17297150 (-) True G71117
TU105081 lncRNA downstream 424402 16917224 ~ 16919314 (-) True G71035
TU105039 lncRNA downstream 454287 16886805 ~ 16889429 (-) False cd247l
TU105286 lncRNA upstream 12475 17364187 ~ 17368255 (-) False ncam2
TU105295 lncRNA upstream 240252 17591964 ~ 17592183 (-) True G71149
TU105298 lncRNA upstream 242001 17593713 ~ 17593933 (-) True G71152
TU105306 lncRNA upstream 251653 17603365 ~ 17603623 (-) True G71160
XR_006251765.1 lncRNA upstream 255829 17607541 ~ 17629953 (-) True LOC122351532
XM_043248528.1 mRNA downstream 27898 17299245 ~ 17315818 (-) True appb
XM_043248530.1 mRNA downstream 27901 17299245 ~ 17315815 (-) False appb
XM_043248271.1 mRNA downstream 145384 17196411 ~ 17198332 (-) False si:ch211-160b11.4
XM_043248035.1 mRNA upstream 12481 17364193 ~ 17521559 (-) False ncam2
XM_043248033.1 mRNA upstream 12481 17364193 ~ 17521559 (-) True ncam2
XM_043248036.1 mRNA upstream 21449 17373161 ~ 17521560 (-) False ncam2
XM_043248995.1 mRNA upstream 207816 17559528 ~ 17574374 (-) True zp2l1
XM_043248852.1 mRNA upstream 298263 17649975 ~ 17652121 (-) True dnajc28
TU105258 other downstream 88225 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 519941 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 520022 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 1571852 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 1944279 15389849 ~ 15399437 (-) False tmtc4
XR_006251863.1 other upstream 1218043 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2368786 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 2444545 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 2530112 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 3137452 20489164 ~ 20503890 (-) False G71938

Expression Profile