RNA id: XR_006251858.1


Basic Information

Item Value
RNA id XR_006251858.1
length 1045
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC122352145
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16030874 ~ 16032168 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGTGGCAGCACATACTCCACTTTTACAGTTACCAGAAGACATCAGTTCGGAGGTAAATGTCTCCTACAGCTATGCTATTAAGATTTATAAGACTATTTCTTCATTAACGAACAACTCCACAGAGGAACAATAGAGAAAACTTCAATAACGTTATAGTCCGCCAAAAGAGTCCTGTGGCACAACCTAATATTACAGCCGTTTGTACGGCCTGGTTTTCACGGTGTGAAATATCCTACCATGCAGAGTTCTTTATTTGTTAGTCTCCTTACTGCATTCTTCTGTTGTGGtaaagaaaaatacaagaaTGTCGAAAGCCTGCATTGTGGATTCAGTGCTGTTTATCTTTGCTCAGTGCGCTTCTGTGACTCCAAACTCCATCGGAACAGGAAAGCTGCTGTCAGCAATCAATATGCTGCAGTGCAGTTTATAATCGTCTCGTCGTTCTTAATTGATATTGACGCGACTTTCAACTTGCTTCATTGGTCGCCAAAGCGAAAAACCCACTCTCCCGCTCCTGCTTTGGAGTCTGACGCTCTGATGAATTCCTCAGAGaGGCCTGTCTGAACTACACTCCTGCGCTGGGTCCTGCTGTGGTGGCAAATTACTGGGCCTGCCACTGGGTGTATAGTGTTACTCACTAGTGGTGATCGCCGTTGTCCTCAGGTTTGTCTCGACGGGGAAAAAGCGAAATGAAAAACGTGATTAGCTGAAATAGAGTGATAAGCAGAACAACTATgccctttattttttaatatgagaAAGGACAACCATTCGTAGCATGAATGTGATTTTGCCTGTTTCTTCGTACTGCAAACAGATATGTTATCATGTGAATTTTAGTCATTATCATAATACTATCaacacagttgttttttttaaatagctttaacGTTTAGAGCTTTTTTTTCCTAGTTATTGCCCTATAGTGGCTAATAAATCAgttttgcacattaaaaaatgaTGTTAGAATGCATTCTTAGCATTCCTTATATAATGAATGACTTTTGaacaacaacagcatttataatataacacCAAATATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104581 lncRNA upstream 18720 15974481 ~ 16012154 (+) True G70700
TU104601 lncRNA upstream 66210 15963820 ~ 15964664 (+) True G70715
TU104562 lncRNA upstream 129180 15899451 ~ 15901694 (+) True rabl3
TU104438 lncRNA upstream 338687 15689198 ~ 15692187 (+) True G70603
XR_006251799.1 lncRNA upstream 347852 15681003 ~ 15683022 (+) True LOC122351790
TU104651 lncRNA downstream 122055 16154223 ~ 16183683 (+) False G70743
TU104653 lncRNA downstream 135428 16167596 ~ 16183683 (+) True G70743
TU104648 lncRNA downstream 150200 16182368 ~ 16183683 (+) False G70743
TU104658 lncRNA downstream 171624 16203792 ~ 16205690 (+) True G70746
TU104666 lncRNA downstream 174152 16206320 ~ 16206691 (+) True G70753
XM_043248591.1 mRNA upstream 362 16024987 ~ 16030512 (+) True cnga4
XM_043248717.1 mRNA upstream 35123 15982449 ~ 15995751 (+) True ankrd50l
XM_043248235.1 mRNA upstream 129154 15899427 ~ 15901720 (+) False rabl3
XM_043248817.1 mRNA upstream 241172 15734570 ~ 15789702 (+) True plcl1
XM_043248899.1 mRNA upstream 314973 15711727 ~ 15715901 (+) False LOC122351678
XM_043248376.1 mRNA downstream 9953 16042121 ~ 16045280 (+) True nhlh2
XM_043248377.1 mRNA downstream 9953 16042121 ~ 16045280 (+) False nhlh2
XM_043248096.1 mRNA downstream 19249 16051417 ~ 16078591 (+) False vangl1
XM_043248094.1 mRNA downstream 19249 16051417 ~ 16078591 (+) False vangl1
XM_043248098.1 mRNA downstream 19249 16051417 ~ 16078591 (+) False vangl1
TU104501 other upstream 284768 15734592 ~ 15746106 (+) False plcl1
TU104429 other upstream 319697 15708236 ~ 15711177 (+) False LOC122351678
XR_006251807.1 other upstream 605835 15401128 ~ 15425039 (+) False si:ch211-168k14.2
XR_006251758.1 other upstream 2348883 13676163 ~ 13681991 (+) False ccnt2a
unassigned_transcript_1467 other upstream 2607048 13423714 ~ 13423826 (+) True trnal-caa
TU104743 other downstream 696339 16728507 ~ 16731361 (+) True G70814
TU104753 other downstream 713731 16745899 ~ 16749695 (+) False mpc2b
TU105078 other downstream 884593 16916761 ~ 16919290 (+) True si:ch211-218d20.15
TU105185 other downstream 1171629 17203797 ~ 17206505 (+) False jam2b
TU105274 other downstream 1306959 17339127 ~ 17339622 (+) True G71130

Expression Profile