RNA id: XR_006251860.1


Basic Information

Item Value
RNA id XR_006251860.1
length 2280
lncRNA type sense_over
GC content 0.48
exon number 3
gene id LOC122352164
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6982678 ~ 7035361 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAAACCCAGAGGGATCCAAAACTGCAAATAGTGTTTGGAAATGTTCATGTTTAGCCTCACGTGTTCTGGTGGTGGTCCTCAGCATCACAGAGACAGATAAAACAGCAGCATCAAGCAACTCTTTACCGTCCTCGGCTTCTTCTGTGATTGATTACATAGCTGGAGGCTGGACCAGGCTGGACCATGTTCCCGTCAGACCTTCGGGCCAGTAGATGTGCTTGAGCAGCGTCCGGGGGCTATACAAGACGGCTGGATTAGCGGGCCGAGGGACCTTCGCTGTCACACACCTGCTGCAAGTCCGTGGCGCGCTGCCAGCCGAGGTCAGTTAGCCCGCCAGCCGCATTACCCTGGCAGCAGTTGCCAAGGTGACAGCATGTCAGAGCCTGCCCATTGAGGAGTACGGGGGGCCGACGGCCGACGCATCGCTGCCTCCGACCGGCCCCTGGAACCTGAGGAAGCGGGAGGCCGAAGGCGCGCATTCGAACGCTTAGCAACAAAACTGACTCCACACGTGCCGAGGGCCAGAGCGCCGGAGCCTAAATCATTAAATCTCCGCATTAGAGATTCTAAGCGAGTCTAACGCACTTTCCAGCTCGGTTTAGAATGAGAGCAGTTAATTCGACAGGCAACGGCCTTAAATATGGatatgagcgtgtgtgtgtgtgtgtgtgtgagagagagagtgaaagacaCAAGCAGAGAACAGGAGGTGAAAGGTGTTTCTGCTTTTGTTGTAGCTATCACATTAACTGGAGGATGTGAAGCAGAGGGGAAATAAGCTGTAGGCTCTGTGGTTTAATAGATTACTTACAATTGGACACAGGTATTTGGAGTTAGCCATTATACCCTTGAGGCCCCCAAAAAGGtaaaagaaacatcacaatCCAGCCAAATCTGCCGCCGCTTCTCGTCCCAGCTCCTTTGTGTTTtcgtaaaaaacaaacatgttcgTTTAGCGTTTTTTTCCAGAACGCGCGCGACGCAGCCGCGAATATTTGCATCGGCGTGTTTTCGCCGATTCTGAAGAACACTTACGCATTATCAAGAGCCCTTTCGAGCATAAGCTCTTTTAAATTCAACTCATTGTAGTCACGGCGCAATTTGTTAAGGTCAAATCTTTGTCTGAACGGATTGAGTCGGAATTGTATTGAGGTCATCAAAAAGCACAAAGCCATATCTCTTCAAGGACGCATCTGAATTTCAGCTAAGCTCTCAGAGCCTCAATCTCCCTCGgaaaagaatggaaaaaatgTAGCCCTAAACCCATCGAATAAGGTCTCGGGGCGTCGGAGAACGGCCCCAGCAGGCCTCTCCTGAAATGCTATTACAGTATGCACCCGGGCCCCGTCGCGGAGGCTGAATTCAATATACACGAGTGGCCTACACGACGAGCCATTTGGCAGCTCGAGAAAATCATCCTCGATACATATTCGGGATTGTTTGGTTTTTAATCTGCCGTTCTCGAGCGGGATTCGGTTGGGATGTCAAATCCAAATTGTCACTTCAGAGAGATTTCTCCTTGGACCAcgtggttgttgttgttattattattattattattattattattacgggCGACAAAACGGCTGAACAACAAAATCCTTTCATAGATGAGAGGATACTTTTCACTTTCTCCGCGCTCGTGTTTCACCGTACTCGTTGGGGGATAAGTGCAGGAATTCCTGTTGTTCAATCCTCTCCAAACATGTCACATGCGACGTAGAGGAGAGTTTACGGGCTGAAATAAAAGTAGCTAATTGATGCAATACACCAAGGACGTAATTATCTCTTTGAATAACTGGCGGTGGTTTAATTGCTGGTAATTGTTCTCCAAACCTTGTTCAGAAGTGATGAACACAAGACTGTTATTATGCATCATGTGTTAATCCTGCTATTCTGGCTTAGTCATTAGGGCTTCTGTATCAAAGCGCCACGATAAGGGCGGCAGAGAGGGAAAAATATCTCCCGCGCACACACAATGTACACGCATGGCCGTGACACAACGCGTTATAGTTCCTACACATTCACCTAAACggaaataaacacaaactcGTGCCACCTTTTTGCggtccttcttttttttttctgctgtcgCACGCTCCGGTGCGGATTTTTCTCTCAGATGTCATATTTATAACAGTGGGGTTTCTGTTATCCTGTGTTTGCTGTTAATTATTGCCACATTGCAACACCAGACTCGGAGCTCTACAGGAAACAAACACTGATTAACGTGATTGGGCCTGCTGAGAATTGCAGTCCGGTTGAAGTGTGTTGATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251826.1 lncRNA downstream 87281 6892652 ~ 6895397 (-) True LOC122351994
TU101086 lncRNA downstream 99702 6882585 ~ 6882976 (-) True G68357
TU101051 lncRNA downstream 169663 6809848 ~ 6813015 (-) True G68328
TU101058 lncRNA downstream 188303 6793402 ~ 6794375 (-) True G68333
XR_006251776.1 lncRNA downstream 205704 6775286 ~ 6776974 (-) True LOC122351577
TU101108 lncRNA upstream 111079 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA upstream 111079 7146440 ~ 7153954 (-) False LOC122351350
TU101258 lncRNA upstream 292468 7327829 ~ 7341494 (-) True G68473
TU101275 lncRNA upstream 345929 7381290 ~ 7381508 (-) True G68489
TU101356 lncRNA upstream 779888 7815249 ~ 7818832 (-) True G68555
XM_043248245.1 mRNA downstream 7770 6969817 ~ 6974908 (-) True gpr45
XM_043249415.1 mRNA downstream 13471 6965229 ~ 6969207 (-) False c9h2orf49
XM_043249414.1 mRNA downstream 13471 6965229 ~ 6969207 (-) True c9h2orf49
XM_043249561.1 mRNA downstream 39236 6896477 ~ 6943442 (-) False nck2a
XM_043249562.1 mRNA downstream 39236 6896477 ~ 6943442 (-) True nck2a
XM_043248370.1 mRNA upstream 58542 7093903 ~ 7097792 (-) True tmem182a
XM_043248360.1 mRNA upstream 71198 7106559 ~ 7117477 (-) True slc9a2
XM_043248373.1 mRNA upstream 111794 7147155 ~ 7148631 (-) False LOC122351350
XM_043248362.1 mRNA upstream 119618 7154979 ~ 7194511 (-) False mgat4a
XM_043248361.1 mRNA upstream 119618 7154979 ~ 7194510 (-) True mgat4a
TU100887 other downstream 721609 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 882795 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 938753 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 1059858 5919757 ~ 5922820 (-) False LOC122351463
XR_006251815.1 other downstream 1613089 5349955 ~ 5369589 (-) False LOC122351925
TU101110 other upstream 35624 7070985 ~ 7148620 (-) False LOC122351350
TU101496 other upstream 979088 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 1043775 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1305582 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 2872827 9908188 ~ 9910178 (-) True LOC122351483

Expression Profile