RNA id: unassigned_transcript_1318


Basic Information

Item Value
RNA id unassigned_transcript_1318
length 73
RNA type tRNA
GC content 0.62
exon number 1
gene id trnar-ccu_4
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5405229 ~ 5405301 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gccccagtggcctaatggataaggcactggcctcctaagccagggattgtgggttcgagtcccatctgggggG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100572 lncRNA upstream 12850 5373409 ~ 5392379 (+) True G67979
TU100550 lncRNA upstream 63940 5338969 ~ 5341289 (+) True G67970
TU100537 lncRNA upstream 91669 5307018 ~ 5313560 (+) True G67961
TU100526 lncRNA upstream 108224 5296655 ~ 5297005 (+) True G67955
TU100449 lncRNA upstream 303565 5101359 ~ 5101664 (+) True G67888
TU100613 lncRNA downstream 62240 5467541 ~ 5562170 (+) True G68013
TU100660 lncRNA downstream 341554 5746855 ~ 5764874 (+) False G68056
TU100659 lncRNA downstream 348719 5754020 ~ 5764874 (+) True G68056
TU100662 lncRNA downstream 361038 5766339 ~ 5767373 (+) False G68058
TU100664 lncRNA downstream 361038 5766339 ~ 5768260 (+) True G68058
XM_043249338.1 mRNA upstream 14043 5386472 ~ 5391186 (+) True si:dkey-11f4.14
XM_043249339.1 mRNA upstream 14043 5386472 ~ 5391186 (+) False si:dkey-11f4.14
XM_043249322.1 mRNA upstream 18960 5377251 ~ 5386269 (+) True igsf3l
XM_043249335.1 mRNA upstream 28443 5369603 ~ 5376786 (+) True cd58
XM_043249334.1 mRNA upstream 28443 5369603 ~ 5376786 (+) False cd58
XM_043249342.1 mRNA downstream 118259 5523560 ~ 5527595 (+) True c9h3orf38
XM_043249347.1 mRNA downstream 223821 5629122 ~ 5732070 (+) True LOC122351927
XM_043248537.1 mRNA downstream 411544 5816845 ~ 5865374 (+) True LOC122351459
XM_043249313.1 mRNA downstream 557583 5962884 ~ 5973123 (+) True LOC122351907
XM_043248542.1 mRNA downstream 578588 5983889 ~ 6002637 (+) True LOC122351464
TU100453 other upstream 263077 5140213 ~ 5142152 (+) False ndufb3
TU100423 other upstream 386891 5015633 ~ 5018338 (+) True c9h2orf76
XR_006251862.1 other upstream 687996 4709053 ~ 4717233 (+) True rbm45
TU100144 other upstream 842627 4557143 ~ 4562602 (+) True G67717
TU100101 other upstream 992087 4410876 ~ 4413142 (+) False hoxd4a
unassigned_transcript_1319 other downstream 602 5405903 ~ 5405975 (+) True trnar-ccu_5
unassigned_transcript_1320 other downstream 2175 5407476 ~ 5407548 (+) True trnar-ccu_6
unassigned_transcript_1321 other downstream 2948 5408249 ~ 5408321 (+) True trnar-ccu_7
unassigned_transcript_1322 other downstream 3683 5408984 ~ 5409056 (+) True trnar-ccu_8
unassigned_transcript_1323 other downstream 4566 5409867 ~ 5409939 (+) True trnar-ccu_9