RNA id: unassigned_transcript_1320


Basic Information

Item Value
RNA id unassigned_transcript_1320
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnar-ccu_6
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5407476 ~ 5407548 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gccccagtagcctaatggataaggcactggcctcctaagccagggattgtggATTCAAATCCCATCTGGGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100572 lncRNA upstream 15097 5373409 ~ 5392379 (+) True G67979
TU100550 lncRNA upstream 66187 5338969 ~ 5341289 (+) True G67970
TU100537 lncRNA upstream 93916 5307018 ~ 5313560 (+) True G67961
TU100526 lncRNA upstream 110471 5296655 ~ 5297005 (+) True G67955
TU100449 lncRNA upstream 305812 5101359 ~ 5101664 (+) True G67888
TU100613 lncRNA downstream 59993 5467541 ~ 5562170 (+) True G68013
TU100660 lncRNA downstream 339307 5746855 ~ 5764874 (+) False G68056
TU100659 lncRNA downstream 346472 5754020 ~ 5764874 (+) True G68056
TU100662 lncRNA downstream 358791 5766339 ~ 5767373 (+) False G68058
TU100664 lncRNA downstream 358791 5766339 ~ 5768260 (+) True G68058
XM_043249338.1 mRNA upstream 16290 5386472 ~ 5391186 (+) True si:dkey-11f4.14
XM_043249339.1 mRNA upstream 16290 5386472 ~ 5391186 (+) False si:dkey-11f4.14
XM_043249322.1 mRNA upstream 21207 5377251 ~ 5386269 (+) True igsf3l
XM_043249333.1 mRNA upstream 31696 5369603 ~ 5375780 (+) False cd58
XM_043249342.1 mRNA downstream 116012 5523560 ~ 5527595 (+) True c9h3orf38
XM_043249347.1 mRNA downstream 221574 5629122 ~ 5732070 (+) True LOC122351927
XM_043248537.1 mRNA downstream 409297 5816845 ~ 5865374 (+) True LOC122351459
XM_043249313.1 mRNA downstream 555336 5962884 ~ 5973123 (+) True LOC122351907
XM_043248542.1 mRNA downstream 576341 5983889 ~ 6002637 (+) True LOC122351464
unassigned_transcript_1319 other upstream 1501 5405903 ~ 5405975 (+) True trnar-ccu_5
unassigned_transcript_1318 other upstream 2175 5405229 ~ 5405301 (+) True trnar-ccu_4
TU100453 other upstream 265324 5140213 ~ 5142152 (+) False ndufb3
TU100423 other upstream 389138 5015633 ~ 5018338 (+) True c9h2orf76
XR_006251862.1 other upstream 690243 4709053 ~ 4717233 (+) True rbm45
unassigned_transcript_1321 other downstream 701 5408249 ~ 5408321 (+) True trnar-ccu_7
unassigned_transcript_1322 other downstream 1436 5408984 ~ 5409056 (+) True trnar-ccu_8
unassigned_transcript_1323 other downstream 2319 5409867 ~ 5409939 (+) True trnar-ccu_9
unassigned_transcript_1324 other downstream 3826 5411374 ~ 5411446 (+) True trnar-ccu_10
unassigned_transcript_1325 other downstream 4984 5412532 ~ 5412603 (+) True trnam-cau_28