RNA id: unassigned_transcript_1329


Basic Information

Item Value
RNA id unassigned_transcript_1329
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnam-cau_30
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5413708 ~ 5413779 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agcagagtggcgcagcggaagcgtgctgggcccataacccagaggtcgatggatcgaaaccatcctctgcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100572 lncRNA upstream 21329 5373409 ~ 5392379 (+) True G67979
TU100550 lncRNA upstream 72419 5338969 ~ 5341289 (+) True G67970
TU100537 lncRNA upstream 100148 5307018 ~ 5313560 (+) True G67961
TU100526 lncRNA upstream 116703 5296655 ~ 5297005 (+) True G67955
TU100449 lncRNA upstream 312044 5101359 ~ 5101664 (+) True G67888
TU100613 lncRNA downstream 53762 5467541 ~ 5562170 (+) True G68013
TU100660 lncRNA downstream 333076 5746855 ~ 5764874 (+) False G68056
TU100659 lncRNA downstream 340241 5754020 ~ 5764874 (+) True G68056
TU100662 lncRNA downstream 352560 5766339 ~ 5767373 (+) False G68058
TU100664 lncRNA downstream 352560 5766339 ~ 5768260 (+) True G68058
XM_043249338.1 mRNA upstream 22522 5386472 ~ 5391186 (+) True si:dkey-11f4.14
XM_043249339.1 mRNA upstream 22522 5386472 ~ 5391186 (+) False si:dkey-11f4.14
XM_043249322.1 mRNA upstream 27439 5377251 ~ 5386269 (+) True igsf3l
XM_043249333.1 mRNA upstream 37928 5369603 ~ 5375780 (+) False cd58
XM_043249342.1 mRNA downstream 109781 5523560 ~ 5527595 (+) True c9h3orf38
XM_043249347.1 mRNA downstream 215343 5629122 ~ 5732070 (+) True LOC122351927
XM_043248537.1 mRNA downstream 403066 5816845 ~ 5865374 (+) True LOC122351459
XM_043249313.1 mRNA downstream 549105 5962884 ~ 5973123 (+) True LOC122351907
XM_043248542.1 mRNA downstream 570110 5983889 ~ 6002637 (+) True LOC122351464
unassigned_transcript_1328 other upstream 196 5413440 ~ 5413512 (+) True trnar-ccu_12
unassigned_transcript_1327 other upstream 416 5413221 ~ 5413292 (+) True trnam-cau_29
unassigned_transcript_1326 other upstream 881 5412755 ~ 5412827 (+) True trnar-ccu_11
unassigned_transcript_1325 other upstream 1105 5412532 ~ 5412603 (+) True trnam-cau_28
unassigned_transcript_1324 other upstream 2262 5411374 ~ 5411446 (+) True trnar-ccu_10
unassigned_transcript_1330 other downstream 126 5413905 ~ 5413976 (+) True trnam-cau_31
unassigned_transcript_1331 other downstream 346 5414125 ~ 5414197 (+) True trnar-ccu_13
unassigned_transcript_1332 other downstream 834 5414613 ~ 5414685 (+) True trnar-ccu_14
unassigned_transcript_1333 other downstream 1101 5414880 ~ 5414951 (+) True trnam-cau_32
unassigned_transcript_1334 other downstream 1299 5415078 ~ 5415149 (+) True trnam-cau_33