RNA id: unassigned_transcript_1411


Basic Information

Item Value
RNA id unassigned_transcript_1411
length 73
RNA type tRNA
GC content 0.60
exon number 1
gene id trnar-ccu_42
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5438754 ~ 5438826 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gccccagtggcctaatggataaggcactggcctcctaagccagggattgtgggttcgagtcccatctggggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100572 lncRNA upstream 46375 5373409 ~ 5392379 (+) True G67979
TU100550 lncRNA upstream 97465 5338969 ~ 5341289 (+) True G67970
TU100537 lncRNA upstream 125194 5307018 ~ 5313560 (+) True G67961
TU100526 lncRNA upstream 141749 5296655 ~ 5297005 (+) True G67955
TU100449 lncRNA upstream 337090 5101359 ~ 5101664 (+) True G67888
TU100613 lncRNA downstream 28715 5467541 ~ 5562170 (+) True G68013
TU100660 lncRNA downstream 308029 5746855 ~ 5764874 (+) False G68056
TU100659 lncRNA downstream 315194 5754020 ~ 5764874 (+) True G68056
TU100662 lncRNA downstream 327513 5766339 ~ 5767373 (+) False G68058
TU100664 lncRNA downstream 327513 5766339 ~ 5768260 (+) True G68058
XM_043249338.1 mRNA upstream 47568 5386472 ~ 5391186 (+) True si:dkey-11f4.14
XM_043249339.1 mRNA upstream 47568 5386472 ~ 5391186 (+) False si:dkey-11f4.14
XM_043249322.1 mRNA upstream 52485 5377251 ~ 5386269 (+) True igsf3l
XM_043249333.1 mRNA upstream 62974 5369603 ~ 5375780 (+) False cd58
XM_043249342.1 mRNA downstream 84734 5523560 ~ 5527595 (+) True c9h3orf38
XM_043249347.1 mRNA downstream 190296 5629122 ~ 5732070 (+) True LOC122351927
XM_043248537.1 mRNA downstream 378019 5816845 ~ 5865374 (+) True LOC122351459
XM_043249313.1 mRNA downstream 524058 5962884 ~ 5973123 (+) True LOC122351907
XM_043248542.1 mRNA downstream 545063 5983889 ~ 6002637 (+) True LOC122351464
unassigned_transcript_1410 other upstream 149 5438534 ~ 5438605 (+) True trnam-cau_82
unassigned_transcript_1409 other upstream 348 5438335 ~ 5438406 (+) True trnam-cau_81
unassigned_transcript_1408 other upstream 546 5438137 ~ 5438208 (+) True trnam-cau_80
unassigned_transcript_1407 other upstream 809 5437868 ~ 5437945 (+) True trnar-ccu_41
unassigned_transcript_1406 other upstream 1034 5437649 ~ 5437720 (+) True trnam-cau_79
unassigned_transcript_1412 other downstream 195 5439021 ~ 5439092 (+) True trnam-cau_83
unassigned_transcript_1413 other downstream 394 5439220 ~ 5439291 (+) True trnam-cau_84
unassigned_transcript_1414 other downstream 614 5439440 ~ 5439512 (+) True trnar-ccu_43
unassigned_transcript_1415 other downstream 881 5439707 ~ 5439778 (+) True trnam-cau_85
unassigned_transcript_1416 other downstream 1371 5440197 ~ 5440268 (+) True trnam-cau_86