RNA id: unassigned_transcript_1412



Basic Information


Item Value
RNA id unassigned_transcript_1412
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnam-cau_83
representative True

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5439021 ~ 5439092 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


agcagagtggcgcagcggaagcgtgctgggcccataacccagaggtcgatggatcgaaaccatcctctgcta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU100572 lncRNA upstream 46642 5373409 ~ 5392379 (+) True G67979
TU100550 lncRNA upstream 97732 5338969 ~ 5341289 (+) True G67970
TU100537 lncRNA upstream 125461 5307018 ~ 5313560 (+) True G67961
TU100526 lncRNA upstream 142016 5296655 ~ 5297005 (+) True G67955
TU100449 lncRNA upstream 337357 5101359 ~ 5101664 (+) True G67888
TU100613 lncRNA downstream 28449 5467541 ~ 5562170 (+) True G68013
TU100660 lncRNA downstream 307763 5746855 ~ 5764874 (+) False G68056
TU100659 lncRNA downstream 314928 5754020 ~ 5764874 (+) True G68056
TU100662 lncRNA downstream 327247 5766339 ~ 5767373 (+) False G68058
TU100664 lncRNA downstream 327247 5766339 ~ 5768260 (+) True G68058
XM_043249338.1 mRNA upstream 47835 5386472 ~ 5391186 (+) True si:dkey-11f4.14
XM_043249339.1 mRNA upstream 47835 5386472 ~ 5391186 (+) False si:dkey-11f4.14
XM_043249322.1 mRNA upstream 52752 5377251 ~ 5386269 (+) True igsf3l
XM_043249333.1 mRNA upstream 63241 5369603 ~ 5375780 (+) False cd58
XM_043249342.1 mRNA downstream 84468 5523560 ~ 5527595 (+) True c9h3orf38
XM_043249347.1 mRNA downstream 190030 5629122 ~ 5732070 (+) True LOC122351927
XM_043248537.1 mRNA downstream 377753 5816845 ~ 5865374 (+) True LOC122351459
XM_043249313.1 mRNA downstream 523792 5962884 ~ 5973123 (+) True LOC122351907
XM_043248542.1 mRNA downstream 544797 5983889 ~ 6002637 (+) True LOC122351464
unassigned_transcript_1411 other upstream 195 5438754 ~ 5438826 (+) True trnar-ccu_42
unassigned_transcript_1410 other upstream 416 5438534 ~ 5438605 (+) True trnam-cau_82
unassigned_transcript_1409 other upstream 615 5438335 ~ 5438406 (+) True trnam-cau_81
unassigned_transcript_1408 other upstream 813 5438137 ~ 5438208 (+) True trnam-cau_80
unassigned_transcript_1407 other upstream 1076 5437868 ~ 5437945 (+) True trnar-ccu_41
unassigned_transcript_1413 other downstream 128 5439220 ~ 5439291 (+) True trnam-cau_84
unassigned_transcript_1414 other downstream 348 5439440 ~ 5439512 (+) True trnar-ccu_43
unassigned_transcript_1415 other downstream 615 5439707 ~ 5439778 (+) True trnam-cau_85
unassigned_transcript_1416 other downstream 1105 5440197 ~ 5440268 (+) True trnam-cau_86
unassigned_transcript_1417 other downstream 1302 5440394 ~ 5440465 (+) True trnam-cau_87