RNA id: unassigned_transcript_1451


Basic Information

Item Value
RNA id unassigned_transcript_1451
length 73
RNA type tRNA
GC content 0.59
exon number 1
gene id trnar-ccu_58
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5451071 ~ 5451143 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gccccagtggcctattggataaggcactggcctcctaagccagggattgtgggtttgagtcccatctggggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100572 lncRNA upstream 58692 5373409 ~ 5392379 (+) True G67979
TU100550 lncRNA upstream 109782 5338969 ~ 5341289 (+) True G67970
TU100537 lncRNA upstream 137511 5307018 ~ 5313560 (+) True G67961
TU100526 lncRNA upstream 154066 5296655 ~ 5297005 (+) True G67955
TU100449 lncRNA upstream 349407 5101359 ~ 5101664 (+) True G67888
TU100613 lncRNA downstream 16398 5467541 ~ 5562170 (+) True G68013
TU100660 lncRNA downstream 295712 5746855 ~ 5764874 (+) False G68056
TU100659 lncRNA downstream 302877 5754020 ~ 5764874 (+) True G68056
TU100662 lncRNA downstream 315196 5766339 ~ 5767373 (+) False G68058
TU100664 lncRNA downstream 315196 5766339 ~ 5768260 (+) True G68058
XM_043249338.1 mRNA upstream 59885 5386472 ~ 5391186 (+) True si:dkey-11f4.14
XM_043249339.1 mRNA upstream 59885 5386472 ~ 5391186 (+) False si:dkey-11f4.14
XM_043249322.1 mRNA upstream 64802 5377251 ~ 5386269 (+) True igsf3l
XM_043249333.1 mRNA upstream 75291 5369603 ~ 5375780 (+) False cd58
XM_043249342.1 mRNA downstream 72417 5523560 ~ 5527595 (+) True c9h3orf38
XM_043249347.1 mRNA downstream 177979 5629122 ~ 5732070 (+) True LOC122351927
XM_043248537.1 mRNA downstream 365702 5816845 ~ 5865374 (+) True LOC122351459
XM_043249313.1 mRNA downstream 511741 5962884 ~ 5973123 (+) True LOC122351907
XM_043248542.1 mRNA downstream 532746 5983889 ~ 6002637 (+) True LOC122351464
unassigned_transcript_1450 other upstream 148 5450852 ~ 5450923 (+) True trnam-cau_106
unassigned_transcript_1449 other upstream 1026 5449974 ~ 5450045 (+) True trnam-cau_105
unassigned_transcript_1448 other upstream 1292 5449707 ~ 5449779 (+) True trnar-ccu_57
unassigned_transcript_1447 other upstream 1512 5449488 ~ 5449559 (+) True trnam-cau_104
unassigned_transcript_1446 other upstream 1779 5449220 ~ 5449292 (+) True trnar-ccu_56
unassigned_transcript_1452 other downstream 1491 5452634 ~ 5452706 (+) True trnar-ccu_59
unassigned_transcript_1453 other downstream 2174 5453317 ~ 5453389 (+) True trnar-ccu_60
unassigned_transcript_1454 other downstream 2442 5453585 ~ 5453656 (+) True trnam-cau_107
unassigned_transcript_1455 other downstream 2639 5453782 ~ 5453853 (+) True trnam-cau_108
unassigned_transcript_1456 other downstream 2859 5454002 ~ 5454074 (+) True trnar-ccu_61