RNA id: unassigned_transcript_1456


Basic Information

Item Value
RNA id unassigned_transcript_1456
length 73
RNA type tRNA
GC content 0.59
exon number 1
gene id trnar-ccu_61
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5454002 ~ 5454074 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gccccagtggcctattggataaggcactggcctcctaagccagggattgtgggtttgagtcccatctggggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100572 lncRNA upstream 61623 5373409 ~ 5392379 (+) True G67979
TU100550 lncRNA upstream 112713 5338969 ~ 5341289 (+) True G67970
TU100537 lncRNA upstream 140442 5307018 ~ 5313560 (+) True G67961
TU100526 lncRNA upstream 156997 5296655 ~ 5297005 (+) True G67955
TU100449 lncRNA upstream 352338 5101359 ~ 5101664 (+) True G67888
TU100613 lncRNA downstream 13467 5467541 ~ 5562170 (+) True G68013
TU100660 lncRNA downstream 292781 5746855 ~ 5764874 (+) False G68056
TU100659 lncRNA downstream 299946 5754020 ~ 5764874 (+) True G68056
TU100662 lncRNA downstream 312265 5766339 ~ 5767373 (+) False G68058
TU100664 lncRNA downstream 312265 5766339 ~ 5768260 (+) True G68058
XM_043249338.1 mRNA upstream 62816 5386472 ~ 5391186 (+) True si:dkey-11f4.14
XM_043249339.1 mRNA upstream 62816 5386472 ~ 5391186 (+) False si:dkey-11f4.14
XM_043249322.1 mRNA upstream 67733 5377251 ~ 5386269 (+) True igsf3l
XM_043249333.1 mRNA upstream 78222 5369603 ~ 5375780 (+) False cd58
XM_043249342.1 mRNA downstream 69486 5523560 ~ 5527595 (+) True c9h3orf38
XM_043249347.1 mRNA downstream 175048 5629122 ~ 5732070 (+) True LOC122351927
XM_043248537.1 mRNA downstream 362771 5816845 ~ 5865374 (+) True LOC122351459
XM_043249313.1 mRNA downstream 508810 5962884 ~ 5973123 (+) True LOC122351907
XM_043248542.1 mRNA downstream 529815 5983889 ~ 6002637 (+) True LOC122351464
unassigned_transcript_1455 other upstream 149 5453782 ~ 5453853 (+) True trnam-cau_108
unassigned_transcript_1454 other upstream 346 5453585 ~ 5453656 (+) True trnam-cau_107
unassigned_transcript_1453 other upstream 613 5453317 ~ 5453389 (+) True trnar-ccu_60
unassigned_transcript_1452 other upstream 1296 5452634 ~ 5452706 (+) True trnar-ccu_59
unassigned_transcript_1451 other upstream 2859 5451071 ~ 5451143 (+) True trnar-ccu_58
unassigned_transcript_1457 other downstream 195 5454269 ~ 5454340 (+) True trnam-cau_109
unassigned_transcript_1458 other downstream 414 5454488 ~ 5454560 (+) True trnar-ccu_62
unassigned_transcript_1459 other downstream 681 5454755 ~ 5454826 (+) True trnam-cau_110
unassigned_transcript_1460 other downstream 1296 5455370 ~ 5455442 (+) True trnar-ccu_63
unassigned_transcript_1461 other downstream 2429 5456503 ~ 5456575 (+) True trnar-ccu_64