RNA id: unassigned_transcript_1459


Basic Information

Item Value
RNA id unassigned_transcript_1459
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnam-cau_110
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5454755 ~ 5454826 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agcagagtggcgcagcggaagcgtgctgggcccataacccagaggtcgatggatcgaaaccatcctctgcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100572 lncRNA upstream 62376 5373409 ~ 5392379 (+) True G67979
TU100550 lncRNA upstream 113466 5338969 ~ 5341289 (+) True G67970
TU100537 lncRNA upstream 141195 5307018 ~ 5313560 (+) True G67961
TU100526 lncRNA upstream 157750 5296655 ~ 5297005 (+) True G67955
TU100449 lncRNA upstream 353091 5101359 ~ 5101664 (+) True G67888
TU100613 lncRNA downstream 12715 5467541 ~ 5562170 (+) True G68013
TU100660 lncRNA downstream 292029 5746855 ~ 5764874 (+) False G68056
TU100659 lncRNA downstream 299194 5754020 ~ 5764874 (+) True G68056
TU100662 lncRNA downstream 311513 5766339 ~ 5767373 (+) False G68058
TU100664 lncRNA downstream 311513 5766339 ~ 5768260 (+) True G68058
XM_043249338.1 mRNA upstream 63569 5386472 ~ 5391186 (+) True si:dkey-11f4.14
XM_043249339.1 mRNA upstream 63569 5386472 ~ 5391186 (+) False si:dkey-11f4.14
XM_043249322.1 mRNA upstream 68486 5377251 ~ 5386269 (+) True igsf3l
XM_043249333.1 mRNA upstream 78975 5369603 ~ 5375780 (+) False cd58
XM_043249342.1 mRNA downstream 68734 5523560 ~ 5527595 (+) True c9h3orf38
XM_043249347.1 mRNA downstream 174296 5629122 ~ 5732070 (+) True LOC122351927
XM_043248537.1 mRNA downstream 362019 5816845 ~ 5865374 (+) True LOC122351459
XM_043249313.1 mRNA downstream 508058 5962884 ~ 5973123 (+) True LOC122351907
XM_043248542.1 mRNA downstream 529063 5983889 ~ 6002637 (+) True LOC122351464
unassigned_transcript_1458 other upstream 195 5454488 ~ 5454560 (+) True trnar-ccu_62
unassigned_transcript_1457 other upstream 415 5454269 ~ 5454340 (+) True trnam-cau_109
unassigned_transcript_1456 other upstream 681 5454002 ~ 5454074 (+) True trnar-ccu_61
unassigned_transcript_1455 other upstream 902 5453782 ~ 5453853 (+) True trnam-cau_108
unassigned_transcript_1454 other upstream 1099 5453585 ~ 5453656 (+) True trnam-cau_107
unassigned_transcript_1460 other downstream 544 5455370 ~ 5455442 (+) True trnar-ccu_63
unassigned_transcript_1461 other downstream 1677 5456503 ~ 5456575 (+) True trnar-ccu_64
unassigned_transcript_1462 other downstream 1946 5456772 ~ 5456843 (+) True trnam-cau_111
unassigned_transcript_1463 other downstream 2365 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1464 other downstream 2632 5457458 ~ 5457529 (+) True trnam-cau_112