RNA id: TU10030


Basic Information

Item Value
RNA id TU10030
length 2208
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G6856
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26809948 ~ 26865737 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTCAGTTTTTCAGCAGATAAAAGCGACGTTTATTAATAAGTGTTGCTTTACAAAAGTGAGGCAAATGATTCTGTAGCACAGGTTAATGACAGTGAGACGAAGCAAGCGTAGAGAAGCACACATCTATGGCGTCGTTAGAATTAACCAATTTCACTCATTTTCTCCCAAATTGAAAAGAACGTTTTTAAATGAGGTTTAGTCCTAATCTGAGGCTCCTCCTGAGACCCTAACGGCCGCTGTCACGACATCATCAGATCAGCTGACGTTCTAAACCTGATGTGATTGGCTCTGCTCGTTCCTAGGCGGTTACCTTAATCAGGCCAGGCGCCATCTTGGATCTAAagatttttaaacacttttctgAACCCTTGATGAGCCGAACAATCAGCATGCCGTCAACCGTCCAATCCCGCGGCGCTGCCCTGACTCAGGCCTATAAACACGGTCGCTTGTTCGCTTTGGGTTTTAGACGTGATTTGTTCTCTGCAGATAGTTTTTAAATCATGTGAGCTGCACGGTAACTTCTACTGACTAATGCATTAACAAGACAAGCGGTTTTTTTTCGTTCCGTGACGCTCGGCGTGCGGTTTAGCCGGCGAACCCGATCTCCTTGTAGTAAGCGTCGATGTCCCCGATCACGACCTCCATGACCCTCCGGAGCGCGCTCTGTCCAGCCCCGTCCAGGCCCGCCTTCTCCGCCATCACCTTCACCAGCACCTCCGTGAtcagctgaacacacaGAAGTGAAGGTCAGGCTGTGGCCGAAAGACTCAAATGTTACCCTGAAGTTGTTGAGGGTGATCTTGTGTATGTTGGCGTGAGAGGTGGCCAGCGGTTTGAGGATGGCAGCGTGGTCTCCTCTGGCCTTCAGCAGCTCGCCCAGCTTCTTCAGCACGGTCGCTCCGTGGGACGCCACCGCCGCGTTTCCCGCCAGATCGGACTGAGAGATGCCCACGAACTTGGGGAACAGCTTCTGAGTCTCCGGGTGCTCCTTAAACAACGGGTCAGGACTTCTCCTCCGTGACCCGCGAAGTCGGCCTCCACGGCCCCCCAGCATTTCAGAACCTGGTCGAAATCGGCCATTGTCTGCGTGAGGAAACAAACCAGAAGAGACGCACCTGTCGTTAGTGACCAGCGCTTCGGCCGCTTGGAACAGCGCTTGCTCCGTTGACGAAGGCGTTTGTGGGCGACGCGTTTCAGTGTGAGCCGTTCAGATTAGCATCACATGTCCTGCGCTTCACTCATGACGGGTATTAAGCCACTTCCAGCCGGAAAGCTACTTTAAAACTATACGCATTGAAGAAATGCGGCTCATATGACCTCCTGAACCCATGTCAGGCGGGAGAGCATTATATATAGCGCTCTTGTTTCCAcacattaaatttgtttttagatgAACGGCTGACCTCGAAATTTGACCTCGAAAGAACTCATTAGCAGCGTTCGGCCAATACATAGACTTTAACATGGATCGTTTTCAGTCGGCATTCATTTGCACAATAAGTGGCATTAATCAAAGCAATGTAGCATCTATCGTAGTTTAATAAACCCCGCAGTGAAGTTCATTGGAGGCTGCAGTGATCTGGAAAACGTCCCTGACCTTCAGGATGTCCAGTTTCACTGAGCGCTCCGCGGATCCCGTCTCGTCCCGcaccactcacacactctctttctttttttttatgcactttttcaATTCAGTTTGGACTTTTTTGAGTGTTTGCCCTTTCCTTTACgctttttctttctcagcaAATCCTGCCATGGACtatattttcattcatcattattaaatcttatttgattattttacgATGTCTCTGAATTAGTTTAAAGTTACGATTtcgttttaactttttaaatgcgCTACTTTAttcttctcggacgcttttttAATTGCgattatactttttttgcacgttttccttttgttaaaaaaattattctgcgACATAATAATTACCTTTGAGTTTAATTTAAGCAATACAGgtacagttaataaaaaaacccatcttaaatatgaaaatgaccTCTATTTACATCTTTTTCTTCTGCGCAAAGCATTATAAAGTCCAGTCAAGCTCCTTACCGATATCGGCGTCTTCTCTGTAGAGTGTGTGACTGGATGTGGCTTTGGAAAACTCCCCAAATGAGCTCAGATCATCACTTTTCCCCACTTTCACCTTTTATACAGCGTCCCCGTGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10053 lncRNA downstream 98623 26760004 ~ 26764480 (-) True G6870
TU10058 lncRNA downstream 104811 26754732 ~ 26758292 (-) True G6874
TU10059 lncRNA downstream 104811 26757198 ~ 26758292 (-) False G6874
TU10056 lncRNA downstream 114147 26748723 ~ 26748956 (-) True G6873
TU9983 lncRNA downstream 172613 26689354 ~ 26690490 (-) True G6834
TU10071 lncRNA upstream 51942 26917679 ~ 26919998 (-) False si:ch211-286b5.5
TU10072 lncRNA upstream 51942 26917679 ~ 26920034 (-) False si:ch211-286b5.5
TU10082 lncRNA upstream 67395 26933132 ~ 26942207 (-) True G6887
TU10127 lncRNA upstream 118807 26984544 ~ 26985660 (-) False LOC122349164
TU10130 lncRNA upstream 128701 26994438 ~ 26994699 (-) True G6923
XM_043224041.1 mRNA downstream 1333 26857457 ~ 26861770 (-) True rab1aa
XM_043223950.1 mRNA downstream 9289 26850229 ~ 26853814 (-) True sertad2a
XM_043251440.1 mRNA downstream 29349 26821073 ~ 26833754 (-) False peli1a
XM_043251449.1 mRNA downstream 34678 26821073 ~ 26828425 (-) True peli1a
XM_043246354.1 mRNA downstream 43932 26803408 ~ 26819171 (-) False vps54
XM_043224150.1 mRNA upstream 4557 26870294 ~ 26871984 (-) True pane1
XM_043223543.1 mRNA upstream 6919 26872656 ~ 26878150 (-) False zgc:158803
XM_043223471.1 mRNA upstream 6919 26872656 ~ 26878149 (-) True zgc:158803
XM_043223872.1 mRNA upstream 13330 26879067 ~ 26891282 (-) True mri1
XM_043224628.1 mRNA upstream 28075 26893812 ~ 26907012 (-) True cc2d1a
TU10045 other downstream 60178 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 60178 26802170 ~ 26802925 (-) False c1h19orf53
TU9833 other downstream 445224 26416859 ~ 26417879 (-) False smdt1b
TU9834 other downstream 445224 26416883 ~ 26417879 (-) False smdt1b
TU9622 other downstream 727617 26130788 ~ 26135486 (-) False G6592
TU10183 other upstream 332168 27197905 ~ 27202567 (-) False LOC122344379
XR_006250838.1 other upstream 375487 27241224 ~ 27255067 (-) False LOC122343833
TU10417 other upstream 889045 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 889045 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 1208911 28074648 ~ 28076444 (-) False LOC122349330

Expression Profile