RNA id: TU10058


Basic Information

Item Value
RNA id TU10058
length 3538
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G6874
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26754732 ~ 26758292 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTAACAGCAGATTTAATCAAGGAAACAGGTGGTGCTATACTACGGATAACTCCCCGACAGatttgaaatttacatttaaacagcaGTAGTATAACACACAGAGCTCAATAACCattaaaacactgcttttaCATTCAACCTTGGCTTgaagacacacagacaaataaatgaaacgaaCACAGCTCATTCTTACAATAACTTCGTGAATAGGGGTACGCTTGGGAAAGATTTgctgatataatataatgctaTTATTTGGATTAGtgtaaatgatttctgagggtGCTCCGACAAcgaacatacatatataaattaaagcGACTTCAATAAATTATATGACCAGTAATCGTGGTATCAAGCAGATAAGCAGCCAGCAGAAGGCTGAACTGTAAATACtttgtttaattctgtcataaaCCTGACCGACTCATATTCTTCCTCTGATCTAATCAGATTTGACAGTATCTGGATGTCAGAGGACCGTATGGAGCCATACAAAAAGAGCCAGAGTCACTGGTTTTGGCATCCGGTTCAATTAATAACCGTCATATTCACGgccttttcttttcctctttagGATGAGGTGATATAATAACAGATAAACAGGACCCTTGATATTAACCGACCTTGATATATATCCGACCAAGAGATAACATTATGGAGAGAGGTGTCATAAGGTTGATGAAACTACATCTTACGATAATCACAGGAgagtcatttataaataaaccaatCAGCATTGGCATTAGGCTTTGATAAGTGATGTTGATATGAGTCGCTGTTTCCACATAAAGGAGTCCACGCAAGGGTTTTGGACAgacaaaaaacccccaaacaaacagaaaacaatgaaCCTCAGGAAGAGTGTTGAGGCAAAATGAGCTGCAGGATTTTGGTCCGTTAGGTGAAATGCTCCACGGCGAAGAAAGCAAGCGCGAGATCCACCGGAGCAGCCATCTTGTGCTTCTTCTGGTTTCTTTCAAAGCGTTGTAACGGCGAAAGATTACTTGGCGGTGAGGAAAGTGTTACACATAAAACAAACGAAAACGGTCTCTCTCTGGGCTTCGGGAGCTGGAGGgtcagagaaagaaaatgaacagtGAGTGAAAGGGTCTTCACGAGGCATCCTTTAGCAGATCTACGCGCTCTTCTCATACCTGTGGCTCCCATGCTGGACTTGAACACTTTATACGAGCAACAGCGGGAACAGAAGCTCACGCCACAGTTGCTGCAGTTTCtctggaaaaataaaacgatCACGAGTGAAACTAACATCTAACAGGCTGAAGAGCGCGTTAAAGAGGATGGAGACCGGAAGCCCGTACCCTTTTCTTTAAAACGGAAAACGCTGAATTGCACTGGGAGCAGCTCCCTGTGGAAGGACAAAGAGAAAAGATGGATTGAAAGGTGAATGTATTACGGATGGGGGGAAAAAGCAGGAAGCGCAGTGAGAGCCGTAGTGACCGATGGTGTTGGAAGGGACCCGCTTGCGGAGCTTTTCAGTGAGTTTGGACACTTTACTGCGGATGGGCTCGTTTCTGCTCAGCAGCCCGTTGTCGGACGCTGCGTCGAACTCAGGAACACCGGAAGACACGTCCTCGTCGTCCTACcagagataaacacacagaaggACAGATCAACGATTCATATTCACACCTAGAAGAAACAAGGTGACGGATCTGAAGCCATCAGTTCTCCTGTTCAGCTCCACACCGAGAGATCTTTCTCTTACGTTCTCATGAGAAAACCTCCACACAGCCTTTAAAACACAGACATTTTCCCCATAGATCAATGACTTGATTTTTACTAACTGATTCCAATTTTGGTGGtcaaaactaatatatatacacacacacacacacacacacatatatatatatatatatacacagttatACAAATTTAtcttataattgtattaatagcACATCAAATATTTTGATGGCATGTTTTCCTCATCTGGTCATTGACCCACACACATTAAACCGTGCACCTTGTGCTCCGTTCATGTGAAGCTGTGTGAAGGTTTCCTCTGTGTTAGTTCTGCTCTGTATGTAGAGGGCTCTGGGTTTAGAGATCAGATTTACCGAAGTCATTAGAATGAGACGAATCTCTCCGCCCGTAGCGGCACGCGTGGCGACTTCGGTAAATCTGACCCATGTTTGTTGCTGCTGAGCTCCGTTTCCTGCAGTCACCCGATGACCGGCGAGAGGACTCAGATTTCTGCGCCGTACAGCACTTAACACCGTAAGAACACCGCAAGCCCTCGAAATACAGGCTCCAGGGAAGGTTTAAAATCAGTTCATTCACCGCGGATGCCAAACTGGACATGTTCATAAACGCACTTCATAATTCAGGAGCACAACTGGCAGAGACGCCCATCTCACCTCTATGTTGGTTAGTAGACATTCCCAACCCTTCTCATAACAAGACCTCACGAAAGAAAGAGCGTGACGATCAACCCTGACCTGAAAGACGTTTCACCAAGTAACTGTTTCCTGTGGTGTCACTGTTAATAGAAGCCACCCAAATGAATAATAGCTTGAGGGGGTGTGGTTAGAACACCTAGAGGTCATGATTGACAGGTCTGTGAGCACCTTACGGGTTCTCCATCTCCTCGCAATCTTTGGTAGAAAATAGGCTACGCGCCACACCTACATTCAAAACATGGGCCGGACAGATTTACAACAGTCATGCACCTTGTGACAAGATATACATCTGATTATTATTCTTTAGAAAGCCAAATATTATGTGCGGGTTTGCTCTACTGCGCCACACATTTGAGGTTATTTGCAGTAAATGAGATGCAGATGAATTCACAACTGAACACAGGAAcgagcaaaataaaataaatgatatgctGCTTAAAAGCAATGAAACATCCATTAGACACATTTATgcaaatgatataaatattagGTTTTGTGAGATGCACCCGACTAAAATCTAgtgctaataataaaatgtaataaaaacactaatCAGCTGTGCGCATGCatttactgtaatgcaaaaaacacGCACATTCACACAAAGACAGGATGCTTCTTCAGCCGTTTAGACTGTGAATGTACTCGAACATTAAATGCTCTCGGTTACTCTATTACTCACCACTAACGCCAGAGGAGTTTCCTTGGAGAGCAGAgtagaggtcagaggtcagacatgtacatacacacacactacacagcTAAGGCAGTTTCTCAAACGAAAGGCTGCATCCTTCAGAGCATTTGTAGACTGCATACGTCATAAAGAAGAACTTATTTTAGTTAAGAGTACATTTTTGTGACATGCTTACGCGAATGCTCAGTTAACAGAAATAAACCAGGCCAGATGACGTATCCAGCCCGCAAATGTGACCGCCTTTTGTATTTGAGAAATGGCCTAAATCTACTTGGTTAATGAGAAAGTTGATATCTACACACGTTGATGCTATAGACTCCACACCACTAGAGGGAGCTACTTACCGGCAGAACAAGCTGAGATTCCTTGAGCAGGCAAACAGCAGAAATGGAAGAACatgtgagaaaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10056 lncRNA downstream 5776 26748723 ~ 26748956 (-) True G6873
TU9973 lncRNA downstream 47904 26653242 ~ 26706828 (-) True G6827
TU9983 lncRNA downstream 64242 26689354 ~ 26690490 (-) True G6834
TU9899 lncRNA downstream 231330 26457806 ~ 26523402 (-) False LOC122353745
TU9936 lncRNA downstream 240812 26513569 ~ 26513920 (-) True G6801
TU10053 lncRNA upstream 1712 26760004 ~ 26764480 (-) True G6870
TU10026 lncRNA upstream 51656 26809948 ~ 26865737 (-) False G6856
TU10030 lncRNA upstream 104811 26863103 ~ 26865737 (-) True G6856
TU10071 lncRNA upstream 159387 26917679 ~ 26919998 (-) False si:ch211-286b5.5
TU10072 lncRNA upstream 159387 26917679 ~ 26920034 (-) False si:ch211-286b5.5
XM_043237802.1 mRNA downstream 15692 26734472 ~ 26739040 (-) True avpi1
XM_043237794.1 mRNA downstream 15695 26734472 ~ 26739037 (-) False avpi1
XM_043237777.1 mRNA downstream 27300 26722519 ~ 26727432 (-) True cdc25d
XM_043237783.1 mRNA downstream 27305 26722519 ~ 26727427 (-) False cdc25d
XM_043247910.1 mRNA downstream 32903 26718192 ~ 26721829 (-) True pgam1b
XM_043246905.1 mRNA upstream 8994 26767286 ~ 26773820 (-) True crtac1a
XM_043246813.1 mRNA upstream 20175 26778467 ~ 26786900 (-) False LOC122350383
XM_043246804.1 mRNA upstream 20175 26778467 ~ 26786900 (-) True LOC122350383
XM_043246825.1 mRNA upstream 29016 26787308 ~ 26798014 (-) False slc25a23a
XM_043246834.1 mRNA upstream 29016 26787308 ~ 26798013 (-) False slc25a23a
TU9833 other downstream 336853 26416859 ~ 26417879 (-) False smdt1b
TU9834 other downstream 336853 26416883 ~ 26417879 (-) False smdt1b
TU9622 other downstream 619246 26130788 ~ 26135486 (-) False G6592
TU9696 other downstream 894324 25859873 ~ 25860408 (-) False patl1
TU9033 other downstream 1039054 25714668 ~ 25715678 (-) False LOC122353196
TU10045 other upstream 43618 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other upstream 43878 26802170 ~ 26802925 (-) False c1h19orf53
TU10183 other upstream 439613 27197905 ~ 27202567 (-) False LOC122344379
XR_006250838.1 other upstream 482932 27241224 ~ 27255067 (-) False LOC122343833
TU10417 other upstream 996490 27754782 ~ 27939452 (-) False G7105

Expression Profile