RNA id: XM_043224501.1



Basic Information


Item Value
RNA id XM_043224501.1
length 1004
RNA type mRNA
GC content 0.47
exon number 3
gene id si:ch211-286b5.5
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26917669 ~ 26920034 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


cgtgcgtgcgtgcgcgcgcgcgccctTGTTTCTCAAACTTCcgtaaactctctctctctctcgagtcAGTCATCATGTCCAACAACAacgccagcagcagcagcgtggCCGTAGCGCAGAAAGCCGTCAAACAGCTCAGACTAGAGGCCAAGATGCGACGGATTAACGTTTCTCAGGCTGCCACGGATCTCAAGAACTTCTGCATGCAGAACGCCCATAAAGACCCGCTGCTGATGGGCGTGCCGTCCAGCGACAACCCCTTCCGGCCGCCCAAGTCCTGCGGCCTCCTCTGAACCACTGCTGCCTGATCGCACACAGAGCGGGCGAAGCGTTGCAGATGATGTGACTGCCTTCAAGCGTCTGTCTCTACCTTTACACTACTCCATAAAGACCTCCTGgagcactacacacacacacacactacttagcatagcaaaaaaaagaaacgtttcTACTGGTTCTTCGCTCTTATTTCATAGCTGCACAGATGCTGTCTGTTCGTATGAACTgtattataagtaataatatgcTGAATGTCCACTGTATGGTACCACCGACTGTAAAGCCCCGTGTTTCGGAAGCAATTTTATGtacctttttatgtatttgtaatgcGTATTTTacgaaaacaaaaagacttcCTGGAAGACTGAATGAAGTTTACCCTGGTTTACGTGGAAGGAATGAACGAGTTAAACTATTTTTCCtatcaaaaatgacatttttctacTGTAGCCTTTTACTAATTTATGGCCAGCAGGGTTTGGTTTGAAGATCATTGTGTCTTCAGCGGAGCACGTGTTAGATGTCTTCCTGTGTCTGACGCTGGTTTGAGGTCTGGATTAACGACCTGAGGAGTTCAATCAGGTGCGTCTGATGAGAAAGACGTTCAGTGTGTGTGCTGCTGAGGAAACCCTGATCACCTGCTGCATTAAACCCCTTTTTCCCTGTTTCATTGACTTTTTGCTGAactgacttttaaaataaagttttattgatcaata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU10026 lncRNA downstream 51932 26809948 ~ 26865737 (-) False G6856
TU10030 lncRNA downstream 51932 26863103 ~ 26865737 (-) True G6856
TU10053 lncRNA downstream 153189 26760004 ~ 26764480 (-) True G6870
TU10058 lncRNA downstream 159377 26754732 ~ 26758292 (-) True G6874
TU10082 lncRNA upstream 13103 26933132 ~ 26942207 (-) True G6887
TU10127 lncRNA upstream 64515 26984544 ~ 26985660 (-) False LOC122349164
TU10130 lncRNA upstream 74409 26994438 ~ 26994699 (-) True G6923
TU10133 lncRNA upstream 86618 27006647 ~ 27007143 (-) True G6926
TU10134 lncRNA upstream 87474 27007503 ~ 27007987 (-) True G6927
XM_043223173.1 mRNA downstream 54 26912603 ~ 26917615 (-) True si:ch211-286b5.4
XM_043223267.1 mRNA downstream 56 26912603 ~ 26917613 (-) False si:ch211-286b5.4
XM_043223346.1 mRNA downstream 57 26912603 ~ 26917612 (-) False si:ch211-286b5.4
XM_043224264.1 mRNA downstream 5853 26911058 ~ 26911816 (-) True nanos3
XM_043224628.1 mRNA downstream 10657 26893812 ~ 26907012 (-) True cc2d1a
XM_043245477.1 mRNA upstream 60276 26980305 ~ 26983587 (-) True LOC122349409
XM_043245108.1 mRNA upstream 65330 26985359 ~ 26992582 (-) True LOC122349164
XM_043238097.1 mRNA upstream 94448 27014477 ~ 27024300 (-) True LOC122344082
XM_043238115.1 mRNA upstream 131698 27051727 ~ 27054595 (-) True dnajb1b
XM_043238130.1 mRNA upstream 146129 27066158 ~ 27067828 (-) True ndufb7
TU10045 other downstream 114744 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 114744 26802170 ~ 26802925 (-) False c1h19orf53
TU9833 other downstream 499790 26416859 ~ 26417879 (-) False smdt1b
TU9834 other downstream 499790 26416883 ~ 26417879 (-) False smdt1b
TU9622 other downstream 782183 26130788 ~ 26135486 (-) False G6592
TU10183 other upstream 277876 27197905 ~ 27202567 (-) False LOC122344379
XR_006250838.1 other upstream 321195 27241224 ~ 27255067 (-) False LOC122343833
TU10417 other upstream 834753 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 834753 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 1154619 28074648 ~ 28076444 (-) False LOC122349330

Expression Profile